Rbic054571.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- ZFX
- Assembly
- GCA_029963845.1
- Location
- JANEYF010004511.1:233259-237340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.051 16.1 0.5 1 23 122 145 122 145 0.96 2 11 0.00057 0.12 14.9 1.2 2 22 158 178 157 178 0.94 3 11 2.2e-05 0.0045 19.4 3.0 3 23 230 251 229 251 0.95 4 11 2.8e-06 0.00058 22.2 0.6 1 23 257 279 257 279 0.98 5 11 4.9e-05 0.01 18.3 1.9 1 23 285 307 285 307 0.96 6 11 5.1e-06 0.001 21.4 0.6 1 20 313 332 313 333 0.96 7 11 4.7e-05 0.0097 18.3 1.5 1 23 344 366 344 366 0.99 8 11 5.5e-05 0.011 18.1 2.9 1 23 372 394 372 394 0.98 9 11 0.026 5.4 9.7 0.8 1 23 400 423 400 423 0.97 10 11 0.00045 0.094 15.2 3.8 1 23 437 459 437 459 0.97 11 11 3.6e-06 0.00073 21.9 1.4 1 23 465 488 465 488 0.98
Sequence Information
- Coding Sequence
- ATGAcagaattttgtttaatatgtttaaaaaatgaaaattatttaatcaaaattgTGGGGAAAAGCGCCAGCAATGAAGATGTATTAGATAAACTAAAGAAATGTGTGCCAGAAATCgaatggaatttatgttttaaaatatgcacTTATTGCATAGATGATTTAAATAAGGCATATGATTTTAAAGAGTTATGCATAAACTCTTACAACTCGTGGAGAAATTCCACACCATATGTAAAATCTGAAGTATTAGAAGACAGAACAGGAGCAAACGAGTTAAGTTCGGACAATGATAATGATACTATTTCGTTGGAAAATGATCTAAATTTCTTTGAGGAAGAGAAGTCAAAAGACAATTCTCTTTTTGAATGTTTTGATtgcaaaaaagaatttaaagccaAGTCAGTATTGGAATCTCATATTCAACAGGTGCATAAAAAAGGGAAGAGGATACTTAAAAAGAAGAATGTTTCATGTAAATTTTGTGGAAAAATGTATACTACTCACAATGCCAtgcaaaaacatttaaaaatgtgtagaaaaaaaattaatgaTACAAATATAGAagttgaaaatttagaaaaaggtACAAATTGTAATCAAAACATATCGAACAATAACATAGAAAATCTTGAAATTGTGAATGGTGTGAAGTCTGATGAAGTAGATCTTAAAATTCCACCTATGTGTTCACTTTGTGGAACTACCTTTTGCAACAAATATCTGCTAAAACGTCATCTACAAAATGTCCATGCCActgaaaaaagatttaaatgtgATTTGTGTGACAGAACTTTTGCATCTCCAGTGTATTTAAATGCTCATAAAAGaTATCACGCAGGAGATAGATCTCACATATGTTCGTTTTGTGGCAAAGGATTCATAACAGCTAGTGACTTATACCATCATGAGAAAATACATGCAAATAAAAGAGCATATCGCTGCGAAATATGCCCTAAAGCCTTCAACACTTCCTCTGActtacataaacataaaatttgtgtGCATCTGGACCGTTCAGAATGGAAATATGTGTGCACGTATTGTCAAAGAAGGTTCCCTTTAAAAACCAACCTGGACACTCATGTAAAAACACACACTGGAGAGAAAAACTATCCATGTCACCTGTGCGATAGACGTTGCATTAATAAATCAGTATTAATGAGGCACATTGAAACCCATTCTAATGTCATAGcatttaaatgtaatttgtgCATGCAAGGATATAAATATAGAAAGTCTCTCGATGTTCATATGGCAAAAATTCATGGTATTGGTAACATTAAAATTCCAGAGAGGATTAAAAAGTTCTTCTGTCATCTTTGTCCCAAATCATATTTTGCTAATAACAAACTTCAAAAGCATATTAGATCACATAGTGGAGAAAGACCGTTTCAATGCTCAAATTGTGAGAAATCTTTTGTTGACAAATCATATATAAAGCAGCATTTGAAAACAGCtcataatattattaacattaataaactGGAGTTTtag
- Protein Sequence
- MTEFCLICLKNENYLIKIVGKSASNEDVLDKLKKCVPEIEWNLCFKICTYCIDDLNKAYDFKELCINSYNSWRNSTPYVKSEVLEDRTGANELSSDNDNDTISLENDLNFFEEEKSKDNSLFECFDCKKEFKAKSVLESHIQQVHKKGKRILKKKNVSCKFCGKMYTTHNAMQKHLKMCRKKINDTNIEVENLEKGTNCNQNISNNNIENLEIVNGVKSDEVDLKIPPMCSLCGTTFCNKYLLKRHLQNVHATEKRFKCDLCDRTFASPVYLNAHKRYHAGDRSHICSFCGKGFITASDLYHHEKIHANKRAYRCEICPKAFNTSSDLHKHKICVHLDRSEWKYVCTYCQRRFPLKTNLDTHVKTHTGEKNYPCHLCDRRCINKSVLMRHIETHSNVIAFKCNLCMQGYKYRKSLDVHMAKIHGIGNIKIPERIKKFFCHLCPKSYFANNKLQKHIRSHSGERPFQCSNCEKSFVDKSYIKQHLKTAHNIININKLEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290632;
- 90% Identity
- -
- 80% Identity
- -