Rbic045542.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010003796.1:108010-112561[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.004 0.82 12.3 3.2 1 23 58 80 58 80 0.95 2 18 0.001 0.21 14.2 1.2 3 23 86 106 84 106 0.96 3 18 8.7e-05 0.018 17.5 1.7 3 23 120 140 118 140 0.96 4 18 1.2e-06 0.00026 23.3 1.0 1 23 146 168 146 168 0.97 5 18 2.1e-06 0.00043 22.6 0.3 1 23 174 197 174 197 0.97 6 18 0.053 11 8.7 0.6 1 23 203 226 203 226 0.92 7 18 0.0002 0.041 16.4 1.8 2 23 234 255 234 255 0.97 8 18 0.067 14 8.4 1.1 2 23 271 292 270 292 0.93 9 18 0.0057 1.2 11.8 2.0 1 20 309 328 309 331 0.96 10 18 0.095 20 7.9 1.5 2 23 337 358 337 358 0.95 11 18 8.7e-06 0.0018 20.6 2.2 1 23 414 437 414 437 0.97 12 18 5e-05 0.01 18.3 0.7 1 23 446 469 446 469 0.94 13 18 0.04 8.2 9.1 3.0 1 23 475 498 475 498 0.92 14 18 0.00039 0.08 15.4 2.3 3 23 513 534 512 534 0.97 15 18 0.019 4 10.1 1.5 1 20 541 560 541 562 0.93 16 18 6.4e-05 0.013 17.9 1.9 1 23 577 599 577 599 0.98 17 18 0.018 3.8 10.2 3.1 2 23 605 627 604 627 0.95 18 18 0.0046 0.96 12.1 1.6 1 22 633 654 633 657 0.90
Sequence Information
- Coding Sequence
- atggaaGAAAAACCGATAAAAACGGAAGTAAAAAACGAAGAAACACTTGAAATTAAAGATATTGTAATTGACAACAAGCCTTTAAATGAAGAGATAGAAAAAGACATTCCAGATTTTGTAAATGTGAACAATTTTGTAGGTACTATTCCTGACGAGGAACTTAGAGAAATATACCATTGTACCTattgcaataagagatatatcAGATTCGTCTATTTACAAATACACGAATATATTCATGATCAGCAAAAACATTGTCCGATctgtaattttagttttaaagcaAAGAAGGAttttattgtgcatattaatGGACACATTAAGGAAAAAATGGAGGATGAAAGAAGGagtttattttgtgatttttgtaaaaaatcttttaagaaACGGAGAGCTCTTATACTTCATTTAAGGGTGCACACAAATGAACGTCCGTATAAATGTAATATATGTGGTAAAGCATTTAAGCAAAAAGGATCTCTATCGGATCATAACACTACACATACGAATGTCAAAGCTTTTCCTTgcgagaTATGTTCAGGTTCCTTCACCACAGCATCCAGTTTGAAGAGACATATAAAGAGAATTCATGATGCTGGAAAAACATACTTCTGCAAAATTTGTTCACAAAAAGTAGAAAATTATAACGCCCTTCAACAGCATAGGGCTGAACAGCATCCTGAGGCAAGTGAACATCGTCAGTGCTCTATTTGCCCCATGATATTTAAAAGTTCTTATtcctttaaaaaacataaaaaggaGCATGCGAACAATGGAGAATTTCAAGAGGGAGTTTATAGAAGAAAAGACAAGTGTTACTTGTGTGGTGAGAAATTCCAGAATTATAAATTGTACATTCAGCATAAAGATTATCATTTGTATTACGATAAAGAGGATTTTCAGAGAGCACAGAAAAATGGGTCATTCACTTGCAAATTATGCCAGAgggaatttcaaaataaacaaggTTTATTTCAACACATGCCATTTCATATGGAAAAGACTGAAAAGTGTAATATTTGTCAAGAGTTTTTTACCTACTATGGATATTCAAACCACAAACGGAGAGTCCATTTGCCATTAGAATGCAAAATTTGCAAGGAAGTTGTGGAAGGTACAGTATACATATATGCTATTCTACTattttcaaGTGTTGTTATTCATATTTCAGGTAAAGCGAAGCTGTATAACCATTACAGGACTACCCACTCAGATTTAAACAGACTGCGGGACAGAAATTATTCATGTCACGTATGTAACAAGACTTACAAGTCGAAATACCCACTAGAAATACATATGCAAATATACCatgaaaaatctgaaattataaaaacacaCAAATGTAATGTTTGTGGTAAACAGTTTACAACGAGGGCATCTCTTGGAGGTCACATGACCCTAGTGCACTCAACCAGTGCAAGGTTCAAGTGTGATTCTTGTAATATTGTATTCCATACCCGTTCAAAGTTTCTGGCCCATAATCTTAATTATCATGGAAGAACTATCAAAAAATGGAGGAAAAAGAGGTCACGACTTTGTACAATTTGCAATCAAGAGTTTCGGACTTTTTCTTTACTCCAGCGTCACAAGACGACTAAGCATAAAAAACCCACAACACAGTTTCAGTGTAAAATAtgcttcaaatatttcaagaattTTAGAAACCGAATAGTTcatcttgaaaataaagtttgcacgaaattctttgaaaaaaccaaaataaaattgtataaatgttCTGTTTGTCAAGAAACCTTTGTATTCAGGCATTTGCTCACTACCCACATGGTGGTCCACTCGAAATTTCACAAAACTTGCAGATTCTGCAGTAAAACTTTCACAAAAACAAGTTACGTTAGGACGCATGTAAAAAATGTGCATCCCCTTGAGAAGGCATACTACTGTGGATTTTGTGACATGGAATTTGAAGATTTATCACAGTTGAAATATCATAGACATTCACCTACCCACATAATTAACATTGATAGTAAAATTGAGGTTGAGAGAGACTGTGAAGTTAAAAGTCATTTTGATGAAGAGGATATCGAAGTGAAGAAAGAACCAGTAGAATAG
- Protein Sequence
- MEEKPIKTEVKNEETLEIKDIVIDNKPLNEEIEKDIPDFVNVNNFVGTIPDEELREIYHCTYCNKRYIRFVYLQIHEYIHDQQKHCPICNFSFKAKKDFIVHINGHIKEKMEDERRSLFCDFCKKSFKKRRALILHLRVHTNERPYKCNICGKAFKQKGSLSDHNTTHTNVKAFPCEICSGSFTTASSLKRHIKRIHDAGKTYFCKICSQKVENYNALQQHRAEQHPEASEHRQCSICPMIFKSSYSFKKHKKEHANNGEFQEGVYRRKDKCYLCGEKFQNYKLYIQHKDYHLYYDKEDFQRAQKNGSFTCKLCQREFQNKQGLFQHMPFHMEKTEKCNICQEFFTYYGYSNHKRRVHLPLECKICKEVVEGTVYIYAILLFSSVVIHISGKAKLYNHYRTTHSDLNRLRDRNYSCHVCNKTYKSKYPLEIHMQIYHEKSEIIKTHKCNVCGKQFTTRASLGGHMTLVHSTSARFKCDSCNIVFHTRSKFLAHNLNYHGRTIKKWRKKRSRLCTICNQEFRTFSLLQRHKTTKHKKPTTQFQCKICFKYFKNFRNRIVHLENKVCTKFFEKTKIKLYKCSVCQETFVFRHLLTTHMVVHSKFHKTCRFCSKTFTKTSYVRTHVKNVHPLEKAYYCGFCDMEFEDLSQLKYHRHSPTHIINIDSKIEVERDCEVKSHFDEEDIEVKKEPVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -