Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: ZNF236
Assembly: GCA_029963845.1
Location: JANEYF010001344.1:1377896-1390739[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 2.5e+02 4.5 0.8 1 23 127 149 127 149 0.96

2 14 0.0094 1.9 11.1 0.2 1 23 155 178 155 178 0.95

3 14 0.025 5.2 9.7 0.1 2 23 185 208 184 208 0.95

4 14 0.00023 0.047 16.2 0.3 1 23 214 236 214 236 0.99

5 14 0.0011 0.22 14.0 0.6 2 23 248 269 247 269 0.94

6 14 1.8e-06 0.00038 22.8 0.7 1 23 293 315 293 315 0.98

7 14 2.4e-06 0.0005 22.4 0.9 1 23 321 343 321 343 0.99

8 14 1.3e-05 0.0027 20.1 0.6 1 23 349 372 349 372 0.97

9 14 0.00022 0.046 16.2 2.8 1 23 382 405 382 405 0.97

10 14 4.3e-07 8.9e-05 24.7 1.5 1 23 497 519 497 519 0.98

11 14 6.4e-06 0.0013 21.1 3.4 1 23 525 547 525 547 0.99

12 14 0.0028 0.58 12.7 0.2 1 23 553 575 553 575 0.98

13 14 0.00012 0.025 17.0 2.9 1 23 655 677 655 677 0.97

14 14 5.4 1.1e+03 2.4 1.5 1 8 683 690 683 690 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	2.5e+02	4.5	0.8	1	23	127	149	127	149	0.96
2	14	0.0094	1.9	11.1	0.2	1	23	155	178	155	178	0.95
3	14	0.025	5.2	9.7	0.1	2	23	185	208	184	208	0.95
4	14	0.00023	0.047	16.2	0.3	1	23	214	236	214	236	0.99
5	14	0.0011	0.22	14.0	0.6	2	23	248	269	247	269	0.94
6	14	1.8e-06	0.00038	22.8	0.7	1	23	293	315	293	315	0.98
7	14	2.4e-06	0.0005	22.4	0.9	1	23	321	343	321	343	0.99
8	14	1.3e-05	0.0027	20.1	0.6	1	23	349	372	349	372	0.97
9	14	0.00022	0.046	16.2	2.8	1	23	382	405	382	405	0.97
10	14	4.3e-07	8.9e-05	24.7	1.5	1	23	497	519	497	519	0.98
11	14	6.4e-06	0.0013	21.1	3.4	1	23	525	547	525	547	0.99
12	14	0.0028	0.58	12.7	0.2	1	23	553	575	553	575	0.98
13	14	0.00012	0.025	17.0	2.9	1	23	655	677	655	677	0.97
14	14	5.4	1.1e+03	2.4	1.5	1	8	683	690	683	690	0.93

Sequence Information

Coding Sequence: ATGTTAGCTGGTAGTCAGTTGGGCGATTCAAGTAACGAAAAGAATCTATCAACATTGGTGGCCATTCCTCTAGACTCCTTAAAGAATCCTGAGGAACACGGAAACTTGAAAGTTATGCAGAACATTTTTATCAAGCAGCTGGATGATGGTTCATTATGTTTAGTAGAAGATGAGgggaagcaaaattttaatcaagaaGAATATCCTTTAACATGTATGACTACCACATCCGGTCTAGACAGTGAGTTTTCTCAGAGCATACCAGCTAGaaataacACAATATTATTGCAGTCTCCTGTGAAAAAGCCAAATCAtgataaattttcgttaaaaagcCAACCCGCAAAGAAGCTAATTCCAAAGATACTTGATAAAAAATACAAGTGTATAAAATGCGACAATTTGTTCGATACACTTCTTCTCTACCGAGATCATATGAAGTGGCATAAATGTCAAAAGAAATTCAAGTGTCCGAAATGTTTTGCTGGCTATAATATAGAAAACAACCTGAAAATTCACATGATACTTATGCATACGGAGGAAAGTAACACACAGTGCCctatttgtaatgttaatttaacGTTTCAAAGAGCTGCCAGTTTAAAGTCACATTTAATTTTACACCAAGTTGAGGAATTCTATACTTGTGATGAATGCAATGGGGAATTTGATAAAGAGGATGATTTTATGAAGCATATGGAAACACACGCTACTGTGAAAAAGTATGAACAAAGACCTCTAACATGTTCTTATTGTAAAATCAAATTCCAGGATTCCAAAGAGCTGAGGGCGCATGTGTCAGATCACGTAAAATTAAAGAAGACTTTCTTAAAACCTAAAAGACCACGGAAGCCCGGATCTAAAAAGGACACTAAATATGTTTGTAGTGTatgcaataaaagttttatgaaaaattcttTGTTAGAAAGACATGAACGGATCCATAGTGGGGAGAGACCTTATAAGtgTGAATTTTGTGATCGTGGCTTTACTCAAAAAGGGACGTTGCAGATACATATAAGTAGACATAATGGCATTAAACCGTTTTCTTGTACTTTGTGTCCAGCTAAATTTAATCAGAAAGGTAATTTACGAGTACACATACAGAAAACACACACTCTTCCAAATGAAGgccaaaaaatgtacaaatgCTCTGTGTGTACTTGCATTTTTAAAAGGCTTGCCacattgaacagccatatgacaaAAGTGCATATCATCCACAAGGAATCCAAAATGAATGATGATTTAATCGATGAAGTTATGCTGCAACTAAAAGAACTAGAAAAACGGACATCTGCTAAACCCACTGTGGAAGAAAATACAgataaaaataaggaaaatgaaCCAAAGGAGGCAGTACTTGTCGAGAACAATTTGGAGGAAATGAGTGAGAAGCCAGATTTTGTTCACTTAAGTGGATCCTCTAATGAAGGTTCCATTAAGAAATATCTTGTACGGCAGAAGAAAATTGGCGATGTTCGGTGGTATTTCTGCAGCTATTGTTCAAAGCAGTTCAAGAAACCCTCAGACTTAATCAGACACATTAGGGTGCATACTAAGGAAAAGCCATTTAAATGTAAGCAGTGCTCGACGGCATTTTCCTTAAAATCAACGTTAAAATCTCACATGAAAACCCACAAAGCCAAGTTGgattatgtatgtaaaatatgtaattctgCTTTCATTTCTCTTAGAATATTAAATGCCCACCTCAGGAAACATGAATTTGATTCACTTCCAAAATGGCAATGCATTTCTTGCGGTTATTTATTTGATGAGTTGGAAAAAGGATATAAGCACAGAGAAGAAAGAGGTCGAGATAAGTCACATATTATACAGCCATTTATACACAACATTTTAAAGCAGCCTTTGTATGAAACCACTTATGGTTCCTTGCCCCTTAAACCTCCAAAAACAAGAATTCCAAATACGGGTATGGAATCTCCCGCTGCCAGACCATTTCACTGTGGTAGCTGTGATGCAAGATTTACGAGAAGGATTAACTTGAAAAGACATATACAGTATCATGAAAacgatagaaaatttaaatgccaTATATGCCCCAAGTAA
Protein Sequence: MLAGSQLGDSSNEKNLSTLVAIPLDSLKNPEEHGNLKVMQNIFIKQLDDGSLCLVEDEGKQNFNQEEYPLTCMTTTSGLDSEFSQSIPARNNTILLQSPVKKPNHDKFSLKSQPAKKLIPKILDKKYKCIKCDNLFDTLLLYRDHMKWHKCQKKFKCPKCFAGYNIENNLKIHMILMHTEESNTQCPICNVNLTFQRAASLKSHLILHQVEEFYTCDECNGEFDKEDDFMKHMETHATVKKYEQRPLTCSYCKIKFQDSKELRAHVSDHVKLKKTFLKPKRPRKPGSKKDTKYVCSVCNKSFMKNSLLERHERIHSGERPYKCEFCDRGFTQKGTLQIHISRHNGIKPFSCTLCPAKFNQKGNLRVHIQKTHTLPNEGQKMYKCSVCTCIFKRLATLNSHMTKVHIIHKESKMNDDLIDEVMLQLKELEKRTSAKPTVEENTDKNKENEPKEAVLVENNLEEMSEKPDFVHLSGSSNEGSIKKYLVRQKKIGDVRWYFCSYCSKQFKKPSDLIRHIRVHTKEKPFKCKQCSTAFSLKSTLKSHMKTHKAKLDYVCKICNSAFISLRILNAHLRKHEFDSLPKWQCISCGYLFDELEKGYKHREERGRDKSHIIQPFIHNILKQPLYETTYGSLPLKPPKTRIPNTGMESPAARPFHCGSCDARFTRRINLKRHIQYHENDRKFKCHICPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -