Rbic059112.2
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010004899.1:138375-154526[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.021 4.3 10.0 3.2 2 23 154 175 153 175 0.96 2 14 9.2e-05 0.019 17.4 7.1 1 23 180 202 180 202 0.98 3 14 0.0004 0.082 15.4 4.0 1 23 208 230 208 230 0.97 4 14 0.0051 1.1 11.9 2.1 1 20 236 255 236 257 0.93 5 14 7.7e-05 0.016 17.7 0.1 1 23 264 286 264 286 0.98 6 14 3.4e-05 0.0071 18.8 6.6 1 23 458 480 458 480 0.97 7 14 4.3e-06 0.00088 21.6 1.0 1 23 486 509 486 509 0.95 8 14 0.0028 0.57 12.8 0.3 1 23 523 545 523 545 0.93 9 14 0.0011 0.23 14.0 1.8 2 23 552 573 551 573 0.97 10 14 7.9e-07 0.00016 23.9 0.5 1 23 580 602 580 602 0.95 11 14 2.4e-05 0.005 19.2 1.1 1 23 608 630 608 630 0.98 12 14 2.3e-06 0.00047 22.5 1.0 3 23 638 658 636 658 0.96 13 14 8.9e-06 0.0018 20.6 0.4 1 23 664 686 664 686 0.99 14 14 0.055 11 8.7 0.7 1 23 691 714 691 714 0.97
Sequence Information
- Coding Sequence
- ATGGATTTAGAAGAATTAAACTTAGGTCAGATTTGTCGAACATGTAAATGTGTTACGCCCCAGATGAGATCTCTTTTCGAAGGGTATGAAAATCCACATCACAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCTTCAGTTCAGgtGATGTGTGGAGACGGTTTACCATCGCAGATTTGTCAAATATGTGTGGAACAACTGAACAGCGCTTTTGTTTTCAAACGCCAGTGCGAAAAAATAGATGCGGGTTTCAGAGAGTATGCAAACGTAAAAGTTAATGAAATCAAGGAAGAACAGCAGAACTCTGAATTTAGGGagtCATTGAATACTTTGAACAATCTGCCTAACGAACAATCTTCTTCAAAGGAAAACATGCCGGATGAAATACCAACGCTAGTTACTCCTAAAATTGAAACTGACAATATCCAGTTTATGGACAACAATCAAATGTTACTTACTTGTCGTGAGTGTACCAAGATGTTCACGACGCTAGAAGGTCTACGATGCCATAAACGTATTCACACAGGGAGCATATATAAATGTAAACAGTGTGACAAAGAGTACACGAGACATAATCATTTGCAACGTCATGAGCAGAGTCATAGCGGAAGAAAGGTACATGTTTGCAGAATTTGCAGCAAAACATTGACAAGGATGGAACATTTGAAGAGACACTTGGCGACTCATTTGAGGGAAAAACCATTTTCTTGTAAAACCTGCAACAGAGGTTTCAGCCGCATTGAATACTTACATAATCATACGTCTAAATGCAAagGAGATACAGTCTATCCTTGTGACATTTGCAACAAGGCCCTCAACCGAGAAGATAGCCTTGAGGTGCACAAAAAGATGCATGGCAACCAACAGCCCAAATTACTAACTATCGAAAATCTGGACAATATTGAAGACCATTACTATCAGATTGACCAAAATGTTGATGCCACCTTTTCAGACCACTCAGATGTTGATGATTGCTTTGAATCTCAAATGGAAGTTACAGAAAGTGTAGATGAGGGTAAATTAAAAGAAGCGACAGACTTCACTAATCATGATGAGAAAAGCAAAGTGAGCGAAGTTGTTTCGATAGGTGGTAGGGACAATGATAACAATGAGAGCAAAGACATTGATAGTGAAGAGAAGAGGGTCAATGATACCATAGAAAGCGAAGAGATGGAGGTCAAGGCAGAGGTGAAGGAGGAAGTTATAGTTAATTTCAATGAAGATGAAGATGATATTGGGGATAACAATGAGATGGCTGATAAGAATTCTGGCAACAGCACAGACTTTGAATATCTGCCAAAAAAGAGCATGTCACGAAAAACTAAACACTTAAAACGACATGTCTCTTCTCACTCAAACATCAAGCCATTCTGTTGTACTGTTTGTGCAAAGAGTTTTAGCAGAAGAGATCACTTGAATAAGCACCAGAAGCTACACGAAAGACAAAATGATTATGAGTGCAATATTTGCCAGAAACCGTTTAACAGGGCTGACCATCTAGCCAAGCATAAGGCTTCTAATCATGATATTGGGGAGAAGGTAGCTATTATGGGTGAAAAGAAATATGAATGCCCTCTGTGTAACAAAGGCTTTACAACAGAAAAATCCCGAGATGTTCACGTGAATGACCATAATGGTCAAAAAGAAAATCAGTGCAAGATGTGTGAGACAACTTTCCTCTCCAAGTCAGATCTTACCGAGCATATGAAGTTCCACAATAAACATTCCAAGAAGTTCCTGTGTTCTGAGTGTGGGAAGAGTTTTACCAAAAATGCCTATTTGGTTAACCATATGCGTGGACATCGAGGAGAGAAACCTTTTAAGTGTAAATACTGTGGAAAAGATTTCCTAAGAGCCTCAGAGTTGACTGTTCATGAGAGATACCATACAGGGGAAAAAACCCATTTGTGTACAATTTGTGGAAAAGGATTTGGACGCGGTTACAATTTAACTATACATATGAGAACTCACACTGGAGAGAAACCATATCAGTGCACATATTGTGACGCTTCTTTTGCTCAAGGCTACGACTTGAAGGGTCACATAAGGAGACATACCGGTGAGCGTTTCCAATGTGAATTATGCACAGAGAGCTTCCTTATGGGATACTTGCTCACACAACATAAGCGGACAGTGCATGgTTTGAATGTTGTGGGCAATATACGACGTTTGCAGCCTGTTCATAATAAAGAGAACCCAGATGATCCCTCACCACCCACCATATCACTTCCTAAACCGGTGGTACcagaaaatgttgtaaaatga
- Protein Sequence
- MDLEELNLGQICRTCKCVTPQMRSLFEGYENPHHSPRIDEMLMACASVQVMCGDGLPSQICQICVEQLNSAFVFKRQCEKIDAGFREYANVKVNEIKEEQQNSEFRESLNTLNNLPNEQSSSKENMPDEIPTLVTPKIETDNIQFMDNNQMLLTCRECTKMFTTLEGLRCHKRIHTGSIYKCKQCDKEYTRHNHLQRHEQSHSGRKVHVCRICSKTLTRMEHLKRHLATHLREKPFSCKTCNRGFSRIEYLHNHTSKCKGDTVYPCDICNKALNREDSLEVHKKMHGNQQPKLLTIENLDNIEDHYYQIDQNVDATFSDHSDVDDCFESQMEVTESVDEGKLKEATDFTNHDEKSKVSEVVSIGGRDNDNNESKDIDSEEKRVNDTIESEEMEVKAEVKEEVIVNFNEDEDDIGDNNEMADKNSGNSTDFEYLPKKSMSRKTKHLKRHVSSHSNIKPFCCTVCAKSFSRRDHLNKHQKLHERQNDYECNICQKPFNRADHLAKHKASNHDIGEKVAIMGEKKYECPLCNKGFTTEKSRDVHVNDHNGQKENQCKMCETTFLSKSDLTEHMKFHNKHSKKFLCSECGKSFTKNAYLVNHMRGHRGEKPFKCKYCGKDFLRASELTVHERYHTGEKTHLCTICGKGFGRGYNLTIHMRTHTGEKPYQCTYCDASFAQGYDLKGHIRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVGNIRRLQPVHNKENPDDPSPPTISLPKPVVPENVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -