Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: -
Assembly: GCA_029963845.1
Location: JANEYF010000968.1:30454-32126[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.007 1.4 11.5 0.3 2 23 58 79 57 79 0.96

2 16 0.059 12 8.6 3.1 1 23 83 105 83 105 0.98

3 16 3.2e-05 0.0066 18.9 1.1 1 23 111 133 111 133 0.99

4 16 3.5e-05 0.0072 18.7 0.2 1 23 139 161 139 161 0.95

5 16 1.6e-05 0.0033 19.8 0.2 1 23 167 190 167 190 0.98

6 16 5.5e-06 0.0011 21.3 3.3 1 23 196 218 196 218 0.98

7 16 0.0017 0.35 13.4 0.3 2 23 225 246 224 246 0.97

8 16 3.5 7.2e+02 3.0 0.6 3 23 255 275 254 275 0.80

9 16 0.00099 0.2 14.2 0.6 2 23 279 300 279 300 0.97

10 16 6.3e-06 0.0013 21.1 1.0 1 23 309 331 309 331 0.98

11 16 8.8e-07 0.00018 23.8 1.1 1 23 338 360 338 360 0.98

12 16 3.3e-06 0.00067 22.0 0.9 1 20 366 385 366 388 0.94

13 16 0.0019 0.4 13.3 4.3 1 23 394 416 394 416 0.97

14 16 0.0007 0.14 14.7 3.3 1 23 422 444 422 444 0.98

15 16 0.23 47 6.7 5.1 1 19 449 467 449 470 0.92

16 16 0.0089 1.8 11.2 2.1 1 23 507 529 507 529 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.007	1.4	11.5	0.3	2	23	58	79	57	79	0.96
2	16	0.059	12	8.6	3.1	1	23	83	105	83	105	0.98
3	16	3.2e-05	0.0066	18.9	1.1	1	23	111	133	111	133	0.99
4	16	3.5e-05	0.0072	18.7	0.2	1	23	139	161	139	161	0.95
5	16	1.6e-05	0.0033	19.8	0.2	1	23	167	190	167	190	0.98
6	16	5.5e-06	0.0011	21.3	3.3	1	23	196	218	196	218	0.98
7	16	0.0017	0.35	13.4	0.3	2	23	225	246	224	246	0.97
8	16	3.5	7.2e+02	3.0	0.6	3	23	255	275	254	275	0.80
9	16	0.00099	0.2	14.2	0.6	2	23	279	300	279	300	0.97
10	16	6.3e-06	0.0013	21.1	1.0	1	23	309	331	309	331	0.98
11	16	8.8e-07	0.00018	23.8	1.1	1	23	338	360	338	360	0.98
12	16	3.3e-06	0.00067	22.0	0.9	1	20	366	385	366	388	0.94
13	16	0.0019	0.4	13.3	4.3	1	23	394	416	394	416	0.97
14	16	0.0007	0.14	14.7	3.3	1	23	422	444	422	444	0.98
15	16	0.23	47	6.7	5.1	1	19	449	467	449	470	0.92
16	16	0.0089	1.8	11.2	2.1	1	23	507	529	507	529	0.97

Sequence Information

Coding Sequence: atggaaacgAAAAAACGATTATCTACCACATCACCCTCCaaagtaattgaaataaaagaaGAGCCTAATATTGATTTTTGCGACTCCAACAGTGAATGGTCTGAGACTCTACCTTTAGAAAAACTAAAAGTAGAAATAATAGAGCCCGATAGCagtaataaagaaaaagtgGTGTGTAAAACTTGTGAGGTCATATTTGTTAATTATCACGAACTGAAAATCCACAACATGATACACTCTGTTGATCATACATGTTTCATTTGTAATGAATTTGTGAAAAATAGGTTTCAGTTTGTGGGACATGTTCGAAAACACATGTGTGCAAAGCCTTTCAGGTGTCCTAATTGCGAACGAACTTTTCCTACTTCTAGAGAAACAAAGTTACATCAAAGGGTGCATAGTGATGATAGACCATATATGTGCACTGAGTGTGGCAAAGCATTCAAGCAGATTACAACTCTAAAAGACCACGAGGTGGTACACACTGGAGAGAAAAGGTTTAAATGCAAgATTTGTGAGGGTGCGTTTGCAACAGCCACGAGTCTAAGGAGACATGTTCGAGTAATGCACGAAACCGTTCGCTCCTTCAGGTGTCATTATTGCAAAGAAGGCTTCACTAGCAAGCAGGCTCTAAAGCAACACATGAGTATTCACAAAGATATTGACCCTCTAAAATGTCAGTTGTGTGGTGAGAAATTACCAAATCAAGAGGAATATACTGCACATAAGAACAAGCATATTGAATTAAAACAGTCGGGAAACTGTGAATATTGTGGgaataaaactttttacttCGGTTTAAAAGAACATATAGCAAAAATGCATCAGCCGAGATCATGTGATATTTGCAACTTAGTATTTTATGATGAAAAGTCAATGGAGAATCACCGAAAAAGTCACCAGGAAGAGCCTCTAAAGGAAGatttcatttgtaatatatgcaataaacaatttgagTTTCCACGTTACCTAAAAGCCCACATAAAGCGCCATGAAGAAAACTACAAGAAATTCAAATGTGATTTGTgtgaaaaaacattttcatctaAACGAGACCTAACTGATCATCTCAATGTACACGCTGATGTTAAAAACTACAAGTGCAAGATTTGCGATAAGGCGTTCCGTACTAAACAGAGTGTAAACAAGCATATGCCTATACATTCCGATAAAAGACCTTTCCAATGCAAACTATGTGAGAAACGTTTTAAAAAGCAGTCAATTTTGAGAAAACATTCATTTACACACTCTCGTGCTCGTCCGTATCATTGTGATTTGTGTGTGAGGAAATACAAATCTAAGGAATCATTGAGAGTTCACAGGCTGACGCATCAAAAAGTTCGACACAAATGTAATATCTGTGCAAAATCCTTCAAATTTAATACAGTTTTCAAAAGTcatgaatgttttaaaaataggttCGACATAAACAATCGTAGATGTTCTTTTTGCAAGAGGCAGTGCAAGAGTTCAGTTACGTATGCCTGCCATGTTCTTGCCCATTCTCAGAGAAAACTGtttaaatgtgaaatttgtcaAGCTAAGTTGAAGTACGAGTATCATTTGAAGTTACATGAAATTAGACATAGAAATGTTAATgagattaaatga
Protein Sequence: METKKRLSTTSPSKVIEIKEEPNIDFCDSNSEWSETLPLEKLKVEIIEPDSSNKEKVVCKTCEVIFVNYHELKIHNMIHSVDHTCFICNEFVKNRFQFVGHVRKHMCAKPFRCPNCERTFPTSRETKLHQRVHSDDRPYMCTECGKAFKQITTLKDHEVVHTGEKRFKCKICEGAFATATSLRRHVRVMHETVRSFRCHYCKEGFTSKQALKQHMSIHKDIDPLKCQLCGEKLPNQEEYTAHKNKHIELKQSGNCEYCGNKTFYFGLKEHIAKMHQPRSCDICNLVFYDEKSMENHRKSHQEEPLKEDFICNICNKQFEFPRYLKAHIKRHEENYKKFKCDLCEKTFSSKRDLTDHLNVHADVKNYKCKICDKAFRTKQSVNKHMPIHSDKRPFQCKLCEKRFKKQSILRKHSFTHSRARPYHCDLCVRKYKSKESLRVHRLTHQKVRHKCNICAKSFKFNTVFKSHECFKNRFDINNRRCSFCKRQCKSSVTYACHVLAHSQRKLFKCEICQAKLKYEYHLKLHEIRHRNVNEIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310775;
90% Identity: iTF_01370091;
80% Identity: -