Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: -
Assembly: GCA_029963845.1
Location: JANEYF010004372.1:267269-300755[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00012 0.025 17.0 2.4 1 23 391 413 391 413 0.97

2 18 0.0001 0.021 17.3 1.8 1 20 419 438 419 441 0.94

3 18 2.1e-05 0.0044 19.4 0.8 1 23 447 469 447 469 0.98

4 18 0.00028 0.058 15.9 3.6 3 21 477 495 475 497 0.94

5 18 3.7e-05 0.0076 18.7 4.6 1 23 503 525 503 525 0.99

6 18 3.5e-05 0.0072 18.7 5.3 1 23 531 553 531 553 0.97

7 18 1.3e-05 0.0027 20.1 8.2 1 23 559 581 559 581 0.97

8 18 1.4e-07 2.8e-05 26.3 2.7 1 23 587 609 587 609 0.98

9 18 0.0001 0.021 17.3 6.7 1 23 615 637 615 637 0.97

10 18 0.00014 0.028 16.9 4.8 1 23 643 665 643 665 0.97

11 18 2.2e-06 0.00046 22.5 3.0 1 23 671 693 671 693 0.98

12 18 1.5e-05 0.003 19.9 8.0 1 23 699 721 699 721 0.98

13 18 3.9e-05 0.008 18.6 9.1 1 23 727 749 727 749 0.98

14 18 2.4e-05 0.0049 19.3 7.7 1 23 755 777 755 777 0.98

15 18 1.5e-05 0.003 19.9 7.1 1 23 783 805 783 805 0.97

16 18 0.00019 0.039 16.4 0.2 1 23 811 833 811 833 0.97

17 18 0.12 25 7.6 5.0 1 23 843 865 843 865 0.98

18 18 3.8e-07 7.8e-05 24.9 0.9 1 23 871 893 871 893 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00012	0.025	17.0	2.4	1	23	391	413	391	413	0.97
2	18	0.0001	0.021	17.3	1.8	1	20	419	438	419	441	0.94
3	18	2.1e-05	0.0044	19.4	0.8	1	23	447	469	447	469	0.98
4	18	0.00028	0.058	15.9	3.6	3	21	477	495	475	497	0.94
5	18	3.7e-05	0.0076	18.7	4.6	1	23	503	525	503	525	0.99
6	18	3.5e-05	0.0072	18.7	5.3	1	23	531	553	531	553	0.97
7	18	1.3e-05	0.0027	20.1	8.2	1	23	559	581	559	581	0.97
8	18	1.4e-07	2.8e-05	26.3	2.7	1	23	587	609	587	609	0.98
9	18	0.0001	0.021	17.3	6.7	1	23	615	637	615	637	0.97
10	18	0.00014	0.028	16.9	4.8	1	23	643	665	643	665	0.97
11	18	2.2e-06	0.00046	22.5	3.0	1	23	671	693	671	693	0.98
12	18	1.5e-05	0.003	19.9	8.0	1	23	699	721	699	721	0.98
13	18	3.9e-05	0.008	18.6	9.1	1	23	727	749	727	749	0.98
14	18	2.4e-05	0.0049	19.3	7.7	1	23	755	777	755	777	0.98
15	18	1.5e-05	0.003	19.9	7.1	1	23	783	805	783	805	0.97
16	18	0.00019	0.039	16.4	0.2	1	23	811	833	811	833	0.97
17	18	0.12	25	7.6	5.0	1	23	843	865	843	865	0.98
18	18	3.8e-07	7.8e-05	24.9	0.9	1	23	871	893	871	893	0.96

Sequence Information

Coding Sequence: ATGAATACTGATAATCAAAATGTCCTTGCGGGAGGACATAGTTCTACAAACTCTGAGGGTACAACTCAAAGACCTCCATCAACTACTTCAGTGCCTACCGATTTAAGGGTGAATACCACAGCATTAAATGCAGTGGCACTGAGTAGTGTTGCAAAGTATTGGGTGTTGACAAACTTGTTACCTGGCCCGATACCGCAAGTATCTGTCTATGGGCTGCCAGGAACAAGTAGGGAAAATCAAGGCAAATTGACACAGGATGCTATGCTTGGTCAACACGCTGGACTTCTTCCAACAGATCCTTTGCTTTTGCAACAGCATTCACAAATTCCTGTTAGTATATCGAGTTCCCAGGCAAATTTGGGAATACCGACAGGTGCCATACATCTTGATAATTCCCACAACTTAGGCAATCACCAgcatcaaaatgaaaatatgtccTCACAAAACCACAATCAGATGTCCAGAGACATGTCTCATTCCCAGCAAAATCAACAGCACGGAGGACAGCAAAACATGGTACAAGTTCAAGTTCAGGATAATTTGGTATCTGTTATCGAAGATAATAAAGACCAAAAAGATCTTATTGCAGCCCAGCTACAAGCTGCCCAACTGCAACTTAACGAAAATCAGCTTAATCAACAAGCTTTAACTGTTCAACAGTTACAACATTTACAAGTTCAGCAGGTTTTAGATAATGTTGTTCGCATGGAGAACTCGGTTGAAAATGGCCAGAACCAGTCTAGCAATGATCAGGATCCTCTATCTGACACAATTCAAATTGTTAAAGATGAAAAAATACTTCAGAATTGTAAGCTTCTTAGTGGCGCTCAATTTGGGTTACAAGATCTTAAAGGAAATTTGATGGATGTTAGAACAGCTGATGGCAATATAGTAAAAATACAAACCAACATGCAGGAGCAGGAATTAGTTAAAACTTTGGGAGTTGAAATGGTACAGAATATGTATAAGGTTAATGTAGATGATTTGAATCAGTTGTTGGCTTATCATGAGATTTTTTGGGAAACTCCAAGGAGGTCAAgCATTGCCCAGAACAACACGAACAACATTAATCTGCAACAAAATTCTGGAAATCTCGCTATAATAACAAAAGATGAACAAGAACCCTCTACGAGCAACATTGATAATACCAACACTCCGGTAGTTGGTACTCATGTCTGTGATCTTTGTGGAAAAATGTTCCAGTTTCGTTACCAACTTATTGTGCATAGACGTTACCATACCGAACGAAAACCGTTTACTTGTCAAGTTTGTGGTAAGGCGTTCACAAATGCCCAAGAACTTAGCAGGCATGGAAAATGCCATCTGGGTGGTAGTATGTTCACGTGTGCTGTTTGTTTTCATGTGTTTGCTAACGCAGCCTCACTGGAACGTCACATGAAAAGACATTCAACTGATAAACCATATGGTTGTACAATATGTGGTAAAAGCTTTGTTAGAAAAGAGCATTTAGACAACCATACAAGATGTCACACGGGAGAGACACCATATAGGTGTCAGTACTGTGCCAAGACATTTACCAGAAAAGAACATATGGTGAATCATGTGAGAAAACACACTGGGGAGACTCCCCACAGAtgtgaaatttgtaaaaaatcgttTACACGAAAGGAGCATTTCATGAATCACGTTATGTGGCATACTGGCGAGACACCGCATCATTGCACTATTTGTGGAAAGAAGTATACACGGAAGGAGCATCTTTCTAATCATATGAGAAGCCACACCAATGACACACCTTTTAGGtgcgaaatttgtggtaaatcTTTTACAAGGAAGGAACATTTCACGAATCATATTATGTGGCACACTGGGGAAACACCTCATCGTTGTGACTTTTGTTCAAAAACATTCACTCGAAAAGAACATTTATTAAATCATGTTAGGCAACACACAGGAGAATCGCCTCACCGGTGTGGATTTTGTGCAAAGTCTTTTACTAGGAAAGAGCATTTAATTAATCATGTTAGGCAACATACAGGAGAGACTCCATTTAGATGTAATTTCTGCCCTAAAGCTTTTACGAGAAAAGATCACTTAGTGAATCACGTAAGGCAGCACACTGGAGAGTCTCCCCATAAGTGCACTTTCTGTACAAAGTCGTTTACTAGGAaggaacatttaaataatcacATTAGACAGCATACAGGAGAGTCCCCTCATAGGTGTCATTTCTGTTCGAAATCTTTCACTAGGAAAGAACATTTAACCAATCACGTTAGGATACATACAGGTGAATCCCCTCACAGGTGTGAATTTTGTCAAAAGACCTTCACTCGTAAAGAACATTTAACCAACCACTTAAGACAGCATACAGGAGAAACTCCTCATTGCTGTAATATCTGTTCCAAACCATTTACCCGTAAAGAGCACTTAGTGAATCATATGCGTTCTCATACTGGTGAGCGTCCATTTGCTTGTAATGAATGTGGAAAGGCTTTCCCTCTGAAAGGCAACTTGCTATTTCATCAGAGGTCTCATAATAAAGGTGCTGCTGCTGAACGGCCATTCCGATGCGATCTTTGCGAGAAAGATTTTATGTGCAAGGGTCATTTAGTTTCTCATAGACGTTCACATAGTGGTGAGAGGCCTCACGCTTGTCCAGAATGTGGCAAGACGTTTGTAGAAAAGGGTAATATGCTAAGACATATGCGAAAACATACTGCTGAAAATGGTACAGCTGTGCAAGTAAATAATCTTGCCAATCAACAAGTGAACCAAGTGCAACAGCAGCAACACCAAGGTAACCCTCAACAACAACAAAACTCTCAACCAAATTCTGGGAATATTCAAATACCACAAGTGCAAGTGAGCCAGGCACAACAGCAGCAGCaacaacaaaatagtaatatcGTGCAAACGTCGCACTTACCAATGCACCCTCCTAATAGTCATCCCGTTGTTGTGCCGACAGCAAACAGTAATGTTTTGGCCTCATATTAG
Protein Sequence: MNTDNQNVLAGGHSSTNSEGTTQRPPSTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTSRENQGKLTQDAMLGQHAGLLPTDPLLLQQHSQIPVSISSSQANLGIPTGAIHLDNSHNLGNHQHQNENMSSQNHNQMSRDMSHSQQNQQHGGQQNMVQVQVQDNLVSVIEDNKDQKDLIAAQLQAAQLQLNENQLNQQALTVQQLQHLQVQQVLDNVVRMENSVENGQNQSSNDQDPLSDTIQIVKDEKILQNCKLLSGAQFGLQDLKGNLMDVRTADGNIVKIQTNMQEQELVKTLGVEMVQNMYKVNVDDLNQLLAYHEIFWETPRRSSIAQNNTNNINLQQNSGNLAIITKDEQEPSTSNIDNTNTPVVGTHVCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELSRHGKCHLGGSMFTCAVCFHVFANAASLERHMKRHSTDKPYGCTICGKSFVRKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHIRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICSKPFTRKEHLVNHMRSHTGERPFACNECGKAFPLKGNLLFHQRSHNKGAAAERPFRCDLCEKDFMCKGHLVSHRRSHSGERPHACPECGKTFVEKGNMLRHMRKHTAENGTAVQVNNLANQQVNQVQQQQHQGNPQQQQNSQPNSGNIQIPQVQVSQAQQQQQQQNSNIVQTSHLPMHPPNSHPVVVPTANSNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310750;
90% Identity: iTF_00110755;
80% Identity: -