Rbic032425.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010002683.1:9707-10096[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-06 0.00088 21.0 0.0 5 38 1 34 1 40 0.88 2 2 4.4 1e+03 1.5 0.0 28 42 70 85 63 87 0.64
Sequence Information
- Coding Sequence
- ATGACAAATGCTTTATTAGACGTCAGAAGCGGAATGTCATATAGAGCTGCGTCTATAAAACATGACATTCCCCGAATAATCCTTATGCGGAAACATAAGAGAAACTTACCCGCTAAAACTAAAGTGGGTCCTACAACAGCATTTAGTGAAGAGCAAGAGAACATGTTAGTTTACTGGATCATTGCTATGTCAAAAGCTGGATTTCCTGTTTCTAAAGAAACACTTATGTATAGCGTTAAAAAACTTGCAACTGAATATAACGGGAAAACAACTCCCGGTCGAAAatggtataatttattttgtgcaaGACatccaaatatttttctaagaaCAAGTCAAAATTTAACTACAAGTAGACGTTTAGTATCAGAGGCAGATATATCAAACTGA
- Protein Sequence
- MTNALLDVRSGMSYRAASIKHDIPRIILMRKHKRNLPAKTKVGPTTAFSEEQENMLVYWIIAMSKAGFPVSKETLMYSVKKLATEYNGKTTPGRKWYNLFCARHPNIFLRTSQNLTTSRRLVSEADISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -