Rbic003423.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010000291.1:399186-401548[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-08 2.2e-05 26.1 0.0 17 42 1 26 1 28 0.95
Sequence Information
- Coding Sequence
- ATGTCGGTAAGGGCTGCCTCTAGGGAATTTGGGATTCCCAAAACTACCCTTCAAGACCATAAATCGGGTAAAACACCGAAAATCCCTATGAAAACTGGACCCCAACCAATTTTAACCATCAACGGTGAAAAAAAACTTGTAGACTGGATTATTGGATTAGCCAAGTGTGGGTTTCCCGTAAAAAAAACAGACCTATTGCAAACCGTAGaaacaattgtaaaaaataccgaaaaagaaaaactatttaaagATGGTAAGCCGGGCCAAAAGtggtatcaaaattttttaaagcgtCATCCCGTAATTTCTGTCAGAGAAGCTGAAGGGGTGAACAAAGCTCGAGCTGTGGTGACTGAGGAAAGTATTCGAGCTTGGTttagagatttaaaaaaatatcttgtagACACTGGAAATACGGACATTTTAGATGATCCAGATAGAATGTTGAATGGGGATGAAGCTGGTTTTTCACTTTGTCCTAAAACAGGAAAGGTTTTAGCTCCCAGAGGAtggaaaaatttatatacagttaaaatgggaaatgaaaaagacaacaTAACAGTGTTAATTGTATTTTCAGCAAGTGGAAAAATATGTCCTCCATTAATTCTTTTCCCATATGTTAGACCACCAAAAGCACTAGTTGACAATATGCCCTCTAACTGGGTATTAGGTAGGTCTGAGAGTGGGTGGATGAAGGGAGATACCTTCTTTGAGTATATTGCAAACGACTTCAATGAGTGGATTACTCAGAACAAATTAAAGAGACCCGTTTTGCTATTAATAGACGGCCATAAAAGCCACATGACCATGCAACTAAGTGAGTTTTGTGATCAGAAGAGCATAATTTTATATGCTTTGCCCCCTAACACGACGCATATTCTGCAACCTGCAGATGTAAGCGTTTTTAAACCCTTAAAAACCGAATGGAAGAAAACTGTTACAAAATGGCAAACTCTTCCGCAAAATTTAAATCGTTCAGtaaccaaaataaatttttgtcaagtATTTAAAGAAGCTTTAGATAACACTGATATGGAAAACCACATTCAAAATGGTTTTAGAAAATGTGGATTGTACCCATTTGATCCTAATAACGTGGACTATaccaaatgtataaaaaactttttggaAAATCAATTAACTGCTTCACAAACAGAACCGAAGGAACTGACGGCTTTTGAAATTGAATGTGCTAAAAAGGCGtttaagaaaatagaaaaaaaattgtctgatcGTGGAATAGACAATGAAGTTATTCTGCAAGAATTAAATTCTTTGGATGGTCCCACTGAATCTAGGAATTTGGTAGGCTCCATCATCCCAATGGATGAAATCCAAATAACTCCGACTATTATAATTGAAGTCCCCAGCACTCATGAAGAGAAGAAGTTGACATTGAAAAttcaagagaaaaaaaatgaagtaGCTGAAACGGTCAAGACAAATGAGCAgcaaaaagaagaacaagatatGGAAATTCCAAAAGAAGAAGAAATGCAAATAGCTAAAATGATCAAAACTAATAAGCAAAAGGATACAGAGGAACAAGCGAGAGAACCAGATATTGAAAATCCGAGAAAAGAATTGGAAGTAATCCCAGTAAATCCCAGAGAAGAAGAAATTGAAGTAACTGAAATGGCCGTGAATAATGATGACCATGACAGTGGCAGTAAACCGAATAGAATCCTTCAACCTAGTAATTCCAATGAAACCGAAAATTCTACATCCTCAAATCAATCTTCAACAGCTCAAAAttgtgacaaaaaaattcaatacattCCTTTAGATGTTTCCTTTGAAAATGtacttaaatataatattttaaatgatgtattaacacaaaaaaaacgtGAGAAAGAAAAACCTCCTAAAGCTATAAGTGCACAGACTTGGAGAAATtaccaaaaccaaaaagaaaacgAGAAGAGGGAAAAAGCGGAAAACATAAAACGAAAAAAGGAAGAAAGGATTGCTAATAAGGagacaggaaaaaaattaaagccttcaagaaaaaagaggcaaatagCAAATTCTCAAAATATCCCCACCACgtccaaagaaaaaattaagtgtGCTGAATGCACAGATGATCTGAACAGTGATACAGATAATgaagacaataaaaatataggttgcgataattgttctaaatggtTTCACTTGCGTTGTACGGACTTTATAGGAATCAGTTATGAAGAAGCTTCAACTAGAGACTACACATGTTTTACATGTTCTtag
- Protein Sequence
- MSVRAASREFGIPKTTLQDHKSGKTPKIPMKTGPQPILTINGEKKLVDWIIGLAKCGFPVKKTDLLQTVETIVKNTEKEKLFKDGKPGQKWYQNFLKRHPVISVREAEGVNKARAVVTEESIRAWFRDLKKYLVDTGNTDILDDPDRMLNGDEAGFSLCPKTGKVLAPRGWKNLYTVKMGNEKDNITVLIVFSASGKICPPLILFPYVRPPKALVDNMPSNWVLGRSESGWMKGDTFFEYIANDFNEWITQNKLKRPVLLLIDGHKSHMTMQLSEFCDQKSIILYALPPNTTHILQPADVSVFKPLKTEWKKTVTKWQTLPQNLNRSVTKINFCQVFKEALDNTDMENHIQNGFRKCGLYPFDPNNVDYTKCIKNFLENQLTASQTEPKELTAFEIECAKKAFKKIEKKLSDRGIDNEVILQELNSLDGPTESRNLVGSIIPMDEIQITPTIIIEVPSTHEEKKLTLKIQEKKNEVAETVKTNEQQKEEQDMEIPKEEEMQIAKMIKTNKQKDTEEQAREPDIENPRKELEVIPVNPREEEIEVTEMAVNNDDHDSGSKPNRILQPSNSNETENSTSSNQSSTAQNCDKKIQYIPLDVSFENVLKYNILNDVLTQKKREKEKPPKAISAQTWRNYQNQKENEKREKAENIKRKKEERIANKETGKKLKPSRKKRQIANSQNIPTTSKEKIKCAECTDDLNSDTDNEDNKNIGCDNCSKWFHLRCTDFIGISYEEASTRDYTCFTCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -