Rbic069802.2
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- clz9
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005783.1:503330-504858[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 3.5e-06 28.7 0.0 5 40 22 57 19 61 0.91
Sequence Information
- Coding Sequence
- ATGGTCAGGAAATATAAGAAAGTGTCTGGGACAAAAGTTTACAAGAATTATAGTGCCCAAACTATACAAACTGCCCTAAATCAAATTAGAAGACGACAAATAACGCTACGAGAAGCCGAGGATATTTATAACATCCCAAGGACAACATTATCAAGGCATTTCAGAGGTCCAGTAAAAAAGCAAGGAGGTCAGACAGCCCTAGTAGAAGCAGAAGAAAAACATTTGGTGCAACTTATAGTATTGGCAGGGGAATGGGGCTCTCCTCTGGATAAAATGGATCTTCGATACGCTGTCAAGGGCTACTTGGACAGAAAAGGCGTAAGAAAAAGAACATTCCAAAATAATCTACCAGGACCAGACTGGGCAAGTTCTTTTTTACTGCGGCATAAAGATGTCCTTACGCAGAGGTTATGTGAAAACATTAAGAGGGCCCAAGCAGCTGTCTCCCATGAGACTGTCAAttcatattttgataatttgaaaAACGTGTTAAAAGATGTACAGCCCAACTCCTTGGTAAATTATGATGAAACTTGTTTCGTGTACGATCCTGGAAGGAAGAAGGTGATAGTGAGAAGAGAAACTCGCCAACCTGAACGAATCATAGATTCTGCAAAAAACTCAACATCTGTTATGTTTGCAGGAAGTGGTGGGGGTATTTTGCTCCCGCCGtatattgtttacaaaactGAACATATCTACGACACCTGGATGCTGAATGGATCGAAAAATACACGCTATGGAAGAAATTCAAGTGGTTGGTTTGACCAACCTCTTTTTGAAAATTGGTTTGCAACTATCGCTCTTCCTTATTTCAAGAAGCAGCCTGCACCACGAGTTTTAATTGGTGACAACTTATGTAGCCATCTTTCTTATAAAGTCATAGAACTTTGtgaagaaaatgaaataaaatttgtgtttttaccTCCCTCCTCAACCCACCTAACACAACCGTTAGACGTTTCAggtCTTATCCCAAAACAGTATTTCCCATCTTTGCTGAAAAAAACGCTTGGTAGCTTAGAGACTTTAAGTGAAAATATAAGACGTGGATTTGCAGGCACTGGACTCATTCCACTTGATAGGGATCAAGTTTTAAAGCGAATACCCAAACCAGTGACTGAAGACCATAACCCCAATGATTGGACTGCTTCCGTAATTGATTTGCTTAACGAGAGTCGAAATACTTGCAAATCATCAGTGACAAAGAAGAAGAAGGTGACTGTCGAGCCAGGAAAAAGCATTTCCAAAGAAGATCTTTCTGCAGCTCAGACCAGCAGCACATCCCAATTCAGTAGCCAGACATCCCAATCCAGTAGCCAGGATGCCAACAAAAAGGACTTGTATACTCTTGACGACTTTGAGGAGCTCAGTGTTCCGGAAGAAACCAATTTACCATCTTCTGATGAAGATGAGGTGgacttggaaaatttaaaaaaaagacaaataaaaaaaagtgttgccTAA
- Protein Sequence
- MVRKYKKVSGTKVYKNYSAQTIQTALNQIRRRQITLREAEDIYNIPRTTLSRHFRGPVKKQGGQTALVEAEEKHLVQLIVLAGEWGSPLDKMDLRYAVKGYLDRKGVRKRTFQNNLPGPDWASSFLLRHKDVLTQRLCENIKRAQAAVSHETVNSYFDNLKNVLKDVQPNSLVNYDETCFVYDPGRKKVIVRRETRQPERIIDSAKNSTSVMFAGSGGGILLPPYIVYKTEHIYDTWMLNGSKNTRYGRNSSGWFDQPLFENWFATIALPYFKKQPAPRVLIGDNLCSHLSYKVIELCEENEIKFVFLPPSSTHLTQPLDVSGLIPKQYFPSLLKKTLGSLETLSENIRRGFAGTGLIPLDRDQVLKRIPKPVTEDHNPNDWTASVIDLLNESRNTCKSSVTKKKKVTVEPGKSISKEDLSAAQTSSTSQFSSQTSQSSSQDANKKDLYTLDDFEELSVPEETNLPSSDEDEVDLENLKKRQIKKSVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295966;
- 90% Identity
- -
- 80% Identity
- -