Rbic051876.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010004290.1:366299-366890[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-09 4.5e-07 31.5 0.0 2 35 14 46 13 50 0.94 2 2 5.8 1.4e+03 1.1 0.0 16 24 83 91 80 92 0.83
Sequence Information
- Coding Sequence
- ATGGGTAAACCGTGTCAAAACTTGAGAGCTAAATGGGACGATGAAGCAATGGAGAATGCTATGCGTACTGTGGAGAGAGGAATGTCTCAAAGAAAGGCTTCGGAGAGATTTAATGTTCCTAGGCGAACTCTAAGGAAACCATCTCAAAACGGGTTTTGCGAAGCAAATAATATTCCCCATAAATTTCAAATCGAAAAAGAAACTGCAGGTAAAGCATGGTTTAAGCTCTTCAGAAAACGGAATCCTGAGCTTTCTATTCGTAAGGCGCAAAATATGGACCCTGCTAGGGCAcagaaactaaataaatatattgttaacgATTATTTTACAAAGTTAGAATCAATATTGGATGaaatggatttaaaaaataagcccgAACGTATATTTAATATGGACGAAAAGGGATGCAGGTTAACTCTGCATCACCAGCAAATAGTTTTAGCAAAAAGGGTGTAA
- Protein Sequence
- MGKPCQNLRAKWDDEAMENAMRTVERGMSQRKASERFNVPRRTLRKPSQNGFCEANNIPHKFQIEKETAGKAWFKLFRKRNPELSIRKAQNMDPARAQKLNKYIVNDYFTKLESILDEMDLKNKPERIFNMDEKGCRLTLHHQQIVLAKRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -