Rbic061806.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- clz9
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005147.1:236106-238209[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-11 5.9e-09 37.6 0.0 3 40 17 54 16 58 0.94
Sequence Information
- Coding Sequence
- ATGGTACGAAAGTACATACGAAAAACAAATAGAACCTCTTATCCGCAGGAAAGGCTTGAAgaagctttacaaaaaattcgcTCTGGTGAGCTGACGATACATCACGCAATTCAAGTGTATGGAATTCCAAAAACAACGCTGTTCAATCGTATTAAAGGAAACAGGGGACAAAAAAGTTCAACTTTAGGCAGATGTACTGCTATTCCTCTAAATCAAGAAAACGAGCTGGCcaccaatattaaaataatggaaaaatggGGATTTGGCCTCACTAGAaaagaaattttcgaaattgtaaCCGAATATGTGGAAACTAATCATTTGCAAACACCCTTTAAAAATGGTGTGCCAGGTGAGGACTGGTTTCTGAGGTTCAAAAAAAGACGTAGGTTATCCCTTAAAAATCCCCAATCAGTCGAATTAGCGAGAAAAAATGCGTCAGACTCTTTTATCATCAATCATTACTTTGATATTCTTGAAGAAGCCTTTAGACAACACAAATTAGAAGATTGTCCTAGTCAAATTTACAATCTAGACGAAACTTATTTCTGTCTGGATccttcaaaattaaaagtagtAGGGGCCATTAATTGTTCTTCTACTAGAACCACAAGTGGGCCAGGCAAGGAGAACATAACTGTTCTTATAGCCGCTAGCGCTTCTGGCCAAAAACTTCCACCTATGATCGTCTTTAAAGGAAAGTTTTTATGGGACGCTTGGATTGCACCAGAGGAACAGTCATTTCCCAACCTAACTTACGCCTGTTCTCAGAAGGGATGGATGGAAggcgatattttttataaatatatgaaacatACATTTATTCCAAACATTGGAAATGCCCGACCTGTTTTGCTTATTTTCGACGGCCATTCAACACATATTGATACGAGAACATTAAAACTTGCCATCGAAAATGATATAACTATCGTAAAACTTCCTCCACACACAAGCCATCTTCTGCAGCCGTTGGACTTGTGTGTCTTTCGTTCAATGAAAAATGATTGGGAAGCAAAATTGGTTACCTGGCAAAGAACTCACGTAGGGCAAAAAATGAATAAACGGAATTTCTCTATTTTTGTGAGCCAGGTATGGAGAAGTGCAccagaacaaaatataatcaGCGGATTTAAAAAAGGAGGAATTTTTCCATTTGACCGAGGCGTTGTCAAACCTGAGCAATACGATCCGGCAGCTCTAAGACGTTGGGAGAGTCATATCCGCGAACAAAATCCCCCGAATGTGGTAATTGAGGCAACTTTGCCAGAAGgcgataatatggaaaatcCAGTAATCCCAGAAGTAAAAGAaagtttaaataatgaaaataccgaaattaatttgaatattcCTGCCACTCTCGCTCCCATCCCCTCAACTTCACAGGTCCAGAATTTCCCAGCAGTAAGAAAGGCTCTGCACACTATTGACGATACTGACCCTGTACCATCCCCTACGAGCAGTAGTGTAAGTTTCGAAGAAATTCTCTTGCGTCAAGTTAAACAACGACATAACGAAggtaaaattaagaaaaggAGGGTTGGAACTGGAGCGGAGATTTTAACCAGTAAAGAGGCCATAGAAAGACTAGAAGAAGCTGAAAAACggaaaaagaaaaatatacagaCACCCAGATTAGATGATTCTTCTAGTGAGGCGAGTGAAATGTTATCTCTTCATGATTCGAACAGTGACCTCGGAACTATGGAAGATTTAATGCGTGAATTAGAAGAGGAACAAAAGGAAGACGATCAGGATGACAATATAAAAGTTGGGCATTGGGTACTGGTGGAGTTTGCTactaaaaaaaccaaaaaacattATGTGGgtcaaatactaaaaataacgAATGATGAAGTAAgtgttaaatttacaaaaaaaaaagaaggcgacaaacaaaacacttttatttggCCAGAAAAAGACGATGAATGCTGTGTTTCTGAGGAAGATATTGTAATGGTTTTACCTGAACCAAACCTGGGAAGGAGAGGTGAACTCATTTTTAACGTAAGATTCAGCAATAATTACAATGTGCAGtaa
- Protein Sequence
- MVRKYIRKTNRTSYPQERLEEALQKIRSGELTIHHAIQVYGIPKTTLFNRIKGNRGQKSSTLGRCTAIPLNQENELATNIKIMEKWGFGLTRKEIFEIVTEYVETNHLQTPFKNGVPGEDWFLRFKKRRRLSLKNPQSVELARKNASDSFIINHYFDILEEAFRQHKLEDCPSQIYNLDETYFCLDPSKLKVVGAINCSSTRTTSGPGKENITVLIAASASGQKLPPMIVFKGKFLWDAWIAPEEQSFPNLTYACSQKGWMEGDIFYKYMKHTFIPNIGNARPVLLIFDGHSTHIDTRTLKLAIENDITIVKLPPHTSHLLQPLDLCVFRSMKNDWEAKLVTWQRTHVGQKMNKRNFSIFVSQVWRSAPEQNIISGFKKGGIFPFDRGVVKPEQYDPAALRRWESHIREQNPPNVVIEATLPEGDNMENPVIPEVKESLNNENTEINLNIPATLAPIPSTSQVQNFPAVRKALHTIDDTDPVPSPTSSSVSFEEILLRQVKQRHNEGKIKKRRVGTGAEILTSKEAIERLEEAEKRKKKNIQTPRLDDSSSEASEMLSLHDSNSDLGTMEDLMRELEEEQKEDDQDDNIKVGHWVLVEFATKKTKKHYVGQILKITNDEVSVKFTKKKEGDKQNTFIWPEKDDECCVSEEDIVMVLPEPNLGRRGELIFNVRFSNNYNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289779;
- 90% Identity
- -
- 80% Identity
- -