Rbic006972.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010000603.1:1000867-1020241[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-10 4.4e-08 34.8 0.0 1 40 18 58 18 61 0.94 2 2 2 4.7e+02 2.7 0.0 17 29 267 279 266 298 0.78
Sequence Information
- Coding Sequence
- ATGCCAAGAAATTACGAATGGCCCATTGGTTTCCGGCATTATAGGGATTATACGGATGAAGCTCTTAAAGAAGCCATATTCAAAGTTAGAAGAGGTAGGCTGAAGATAAGAGAAGCTTCACAGACTTACAATATTCCTCGAggaactttacttaataaagTTAAGAATCAACATAAACAAAATGTGGGATCACCTACAGTACTATCAGCGGCTTTTGAAAGAAGCCTCTTAGATGTGATTGTGGCATGTGCAGAATTTGGAAGTCCCATATCCATGTTAGATCTTAgatttattgttaaaagttaTTTAGATAAGGAAGGAataagTTCTCAAATCACTGCCGGTGAAAAAATTGAGAGCACTGCTGAACAAATAGGTGACACAGTTGTTAATTACCTTAAAGAAATAAGAACCTCAAAacccaaaaaaatacaaagaaagaaAATGGTTCGTGTTGAACCAGGAAAATCGGTATGTTCTCAGGATGTGACTAATATTGCTATTAATTTGGAAATGCAGGATCCTTTAGAAGCTGAAATTGAAGACTCTGATGAACCTGACTTGCCTCAATTTACGCAATTGGACTCCCAAGAGACTGAAGAAGATAATAGCACTCAAGATAATAACAACGAAGAACCTGACAAAGACGATTTTATAATTGTCGCTTTTAAGGCTCAAAAAAGTGTTGTtcattttattggaaaaatcctAAGAAAAGACGAAGACagtttttatgaagtaaaattcTTAcgaaagagaaaaaaGACAATCCCTCGAATGTCTGATAGGGACTTAGCTATGAGTATTCGAAGAGCCTCAAGAAATCTTCGCATTCCTGTTACTTTTGTATGGAAAACTTTACGAAAAGACCAGCGACGTGCATACCATTTGCAGTCTGTTCAAGGTTTACATCCAGGTGATAGTGAACACCAGTGGTGGCTTTATGTTGTACCATATTGGATGTACTCAGTATTGGAgtaa
- Protein Sequence
- MPRNYEWPIGFRHYRDYTDEALKEAIFKVRRGRLKIREASQTYNIPRGTLLNKVKNQHKQNVGSPTVLSAAFERSLLDVIVACAEFGSPISMLDLRFIVKSYLDKEGISSQITAGEKIESTAEQIGDTVVNYLKEIRTSKPKKIQRKKMVRVEPGKSVCSQDVTNIAINLEMQDPLEAEIEDSDEPDLPQFTQLDSQETEEDNSTQDNNNEEPDKDDFIIVAFKAQKSVVHFIGKILRKDEDSFYEVKFLRKRKKTIPRMSDRDLAMSIRRASRNLRIPVTFVWKTLRKDQRRAYHLQSVQGLHPGDSEHQWWLYVVPYWMYSVLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -