Rbic063498.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005304.1:10343-11197[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-11 5.3e-09 37.7 0.0 2 39 34 70 33 73 0.95 2 2 7.6 1.8e+03 0.8 0.0 16 24 148 156 145 157 0.83
Sequence Information
- Coding Sequence
- ATGAAAATAAGGCCCATCAAATTTAAGGGGTGGGCCTTATTTCTGcccatcatttttaatttaattaaaccgTGTCAAAACTTGAGAGCTAAATGGGACGATGAAGCAATGGAGAATGCTATGCATGCTGTGGAGAGAGGAATGACTCAAAGAAAGGCTTCGGAGAGATTTAATGTTCCTAGGCGAACTCTAAGAAACCATCTGAAAACGGGTTCTAACATTAGAAAATTAGGACGAGGTTCTGTACTAACTAAACAGCAAGAAAAGGATTTGGTTACTCGTATTATGCGCTTGGCTGAAGTAGGCTATCCAGTGACACCGAAAATAGCTAGACATCCAGTGTTTAGGTTTTGCGAAGCAAATAATATTCCCCATCAATTTCAAATCGAAAAAGAAACTGCAGGTAAAGCATGGCTTAAGCTCTTCAGAAAACGAAATCCTGAGCTTTCTATTCGTAAGGCGCAAAATATGAACCCTGCTAGGGCACAGAAACTAAATAGATATATTGATAACGATTATTTTACAAAGTTAAAATCAACATTGGATaaaatggatttaaaaaaataa
- Protein Sequence
- MKIRPIKFKGWALFLPIIFNLIKPCQNLRAKWDDEAMENAMHAVERGMTQRKASERFNVPRRTLRNHLKTGSNIRKLGRGSVLTKQQEKDLVTRIMRLAEVGYPVTPKIARHPVFRFCEANNIPHQFQIEKETAGKAWLKLFRKRNPELSIRKAQNMNPARAQKLNRYIDNDYFTKLKSTLDKMDLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -