Rgig004156.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- nfxl1
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:45817891-45829052[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 2.6e+03 -0.6 0.8 4 10 204 210 203 210 0.95 2 15 2.1e-06 0.022 15.6 18.1 1 19 218 235 218 235 0.99 3 15 3.1e-07 0.0033 18.2 14.6 1 19 271 289 271 289 0.92 4 15 2.2 2.4e+04 -3.7 1.0 6 10 314 318 313 318 0.88 5 15 2.3e-07 0.0025 18.6 6.4 1 18 324 341 324 342 0.97 6 15 2.7 2.9e+04 -4.0 15.3 3 18 379 394 367 395 0.87 7 15 0.59 6.3e+03 -1.9 0.6 1 5 404 408 404 413 0.89 8 15 6.3e-05 0.67 10.8 15.6 3 18 431 446 429 447 0.91 9 15 2.1e-09 2.3e-05 25.1 11.5 1 18 456 473 456 474 0.97 10 15 0.00021 2.2 9.2 5.6 10 19 523 532 520 532 0.89 11 15 0.058 6.2e+02 1.4 3.6 1 12 542 552 542 552 0.89 12 15 2.3 2.5e+04 -3.7 2.8 14 18 580 584 580 585 0.88 13 15 0.019 2e+02 2.9 6.7 1 11 621 631 615 632 0.81 14 15 0.0002 2.1 9.2 17.0 3 19 662 678 661 678 0.94 15 15 8.6e-06 0.092 13.6 13.2 1 18 721 740 721 741 0.88
Sequence Information
- Coding Sequence
- atgagCACGTTCGGAAGAAATAGTAAAAATCCTTGGCATAAAAACGAACAGAATAAAAGACAAAATGTCTCTAAATATTCCAATCATTCGGCAAATAATGATGTTAGCAGAtccgaaattaaattcaaagaagctcaaaaaaagttacatgAAGCCGTAAAGAAATATGCCAAAGAATACGATTCGTCTTCCGAAGAAGAAGAATTAGAAACcacaaatattataaattctatattgaaaaattacggcGGAACTGGTGataatactaataatttaaacagaaCTCAGGGATTTTTGGAAGATACATTTGTCTCAGGAGCCAATACATGCCTTATTTGCATATCGTCTGTTAAAAGAACTGATtccatatggCATTGCATGGAATGTTATTGTATTTTTCATCTGACGTGCATGCAAAGGTGGTCAAAAGATACAATTGTACAACAAAAACAGCTATCGGAAGAACAAGTAGTTATTCGTCacaatgttaaaataacgTGGGGTTGCCCAAAATGTAGACATGAATATGGACCGTCAGATATCCCAACTAAATATGAAtgcttttgtaaaaaaattgtcgatCCTATATTCCAACCATTTTTAGCCCCGCATTCCTGTGGAGAAACGTGTGGCAAAAACCTGAAACCATTTTGTGGACATGGATGTTTATTGCTTTGTCATCCAGGTCCTTGTCCGCCTTGCCCTCGAACTATAAATGTCTCGTGCTACTGCGGAACGAAGCCTTTGCGACTTCAGCGGTGTAGTAATAAAGAATGGTCATGTGGATCTCCTTGTAATAAGTTGCTGGCATGCCAAAAACATAAATGTACTCGATCGTGTCATGCTGGGGATTGTCCTCCCtgccaaaaaaaaagcatTCAGAAATGCATTTGTGGCAGCAATAACAAATTACGTGACTGTGCCACGCCAATGTGGCAGTGcgataaaGTTTGTGATAAACCTTTAGAATGTGGCTATCATAATTGTCGAGAAATATGTCACATTGGTAAATGCGACTTTTGTGTATTGTCTAAACCTCGAGCATGTCCTTGTGGAAAATCTACATACCATTTGCCTTGCACCGAAGAAACTCCAACTTGTGGGGATACTTGCGGAAAATTATTAGAATGCGATGTTCATATTTGTCATCAACGTTGTCACAAAGACAAGTGTGGAATGTGCGTGGAAATAGTTACAAAGTCGTGCCGTTGTGGCTTACACACGAAGGAAGTACAATGTAAAAAGCCTTATTTGTGTGacacaaaatgtaaaaacattAAAGATTGTTATAAACACCCATGTAATCGAAAATGTTGTGATGGAAATTGTCCGCCATGCGAAAAACCATGTGGCCGAACATTAAGCTGCAGTAATCATAAATGTAATTCAATTTGTCACAGAGGACCTTGTTACCCTTGCAATTGCACTGAAACTGTTTCTTGTCGTTGTGATGGTACGGTAATTACAGTACCTTGTGGTCGAAAAAATAGGACTAGGCCACCAAAATGTTACAAACCTTGCTTaatACCACCAGATTGTCATCATGAAAAACGTGAAAACCATCGATGTCATTTTGGTGATTGTCCACCATGTAGACAAAAGTGtaacaaagaaagattaacgTGTTCTCATCTTTGTTCATCTTTCTGTCATTCTGCTGTATTAGTTAAAGTAGAAGGACAAAAACCATCGATGCCTTGGGAACAAACAGATCCACAAATCATACAGAAGACTCTACCTTGTCCGAACTGTATGGTACCTGTTCCTGTGACATGTTTAGgaaatcACGAAACCAGCGATTGGCCTTGTTATTCCGCCAAAGTCTCTTCTTGTGGTAGATCATGTGGTCGCTTATTAGAATGTCAAAATCATAATTGCTCTTTAACGTGTCATAATGTTGAACATGCATCCAATACATTTACGGCAGGTACAAATTGTGAAAAATGCGACAAAGGTTGCACTAAACCAAGACCAGAAGGTTGTCAACATATTTGTCCAAAACGTTGTCATCCTGGAACATGTCCTCCATGCAAGCAAATGATTCGAATAAAATGCCATTGTGGTCTTAATCAACCGTACGTTTTATGTAGCAATTGGACATCTGTTGACAACAAAACAGACTTGCAAAGTTGTGGAAATCAGTGTCCTAAAAAGtatGAATGTGGACATCGATGTCGTTCCAATTGTCACCCGGGCGATTGCCCCACTACAGAGACCTGTAAGAAAAAGGTTAAAGTGACATGCAACTGTAAACGTATCAAAAAAGAATTTTCATGCGAAACTGTTCGATCTAATTTAGCTTTTGTTGAATGTGACGATGTATgtttcgaaaaacaaaacaaggAAAGGAAACTGAGAGATTTAGAAAAACggcaaaaagaaaaagaagagGAATTGAAGAATCTAAaagaattagaaaaatacgaGAAGAAATTTCAAGGaaagaaaaaaactaaagaaCGAAGGATCGTGAATCAGACTGaagaaaaatcatttttagagaaatatttctcgattataatttctAACACAGAATCCGAACACATTAATCTTAAAGTATTGGGCCAGGACAACGCCGTTGTTCAGTTCAAAATTAAGAAGCACACCCCCTTAAGGAAATTAATGAGTGCATATTGCGATCGAGCCggATTAAGTATGCAAGTGGTTCGTTTTCGTTTTGATGGAAATCCTATTAACGAGAATGACACGCCAACTTCGTTGGACATGGAGGAGGGCGATACGATCGAAGTGTATCAGCAACAAACGGGTGGATCACCACAGCATTAA
- Protein Sequence
- MSTFGRNSKNPWHKNEQNKRQNVSKYSNHSANNDVSRSEIKFKEAQKKLHEAVKKYAKEYDSSSEEEELETTNIINSILKNYGGTGDNTNNLNRTQGFLEDTFVSGANTCLICISSVKRTDSIWHCMECYCIFHLTCMQRWSKDTIVQQKQLSEEQVVIRHNVKITWGCPKCRHEYGPSDIPTKYECFCKKIVDPIFQPFLAPHSCGETCGKNLKPFCGHGCLLLCHPGPCPPCPRTINVSCYCGTKPLRLQRCSNKEWSCGSPCNKLLACQKHKCTRSCHAGDCPPCQKKSIQKCICGSNNKLRDCATPMWQCDKVCDKPLECGYHNCREICHIGKCDFCVLSKPRACPCGKSTYHLPCTEETPTCGDTCGKLLECDVHICHQRCHKDKCGMCVEIVTKSCRCGLHTKEVQCKKPYLCDTKCKNIKDCYKHPCNRKCCDGNCPPCEKPCGRTLSCSNHKCNSICHRGPCYPCNCTETVSCRCDGTVITVPCGRKNRTRPPKCYKPCLIPPDCHHEKRENHRCHFGDCPPCRQKCNKERLTCSHLCSSFCHSAVLVKVEGQKPSMPWEQTDPQIIQKTLPCPNCMVPVPVTCLGNHETSDWPCYSAKVSSCGRSCGRLLECQNHNCSLTCHNVEHASNTFTAGTNCEKCDKGCTKPRPEGCQHICPKRCHPGTCPPCKQMIRIKCHCGLNQPYVLCSNWTSVDNKTDLQSCGNQCPKKYECGHRCRSNCHPGDCPTTETCKKKVKVTCNCKRIKKEFSCETVRSNLAFVECDDVCFEKQNKERKLRDLEKRQKEKEEELKNLKELEKYEKKFQGKKKTKERRIVNQTEEKSFLEKYFSIIISNTESEHINLKVLGQDNAVVQFKIKKHTPLRKLMSAYCDRAGLSMQVVRFRFDGNPINENDTPTSLDMEEGDTIEVYQQQTGGSPQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -