Rgig001369.2
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- stc
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:12647715-12650944[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9 3e+04 -4.0 1.6 15 19 312 316 311 316 0.81 2 13 0.22 2.4e+03 -0.5 0.1 4 10 345 351 344 355 0.94 3 13 3e-06 0.032 15.1 13.5 1 19 358 375 358 375 0.93 4 13 5.4e-05 0.58 11.0 12.7 1 18 411 428 411 429 0.98 5 13 6.6e-06 0.07 14.0 16.1 1 18 469 486 469 487 0.99 6 13 0.00062 6.6 7.7 11.1 4 19 534 549 527 549 0.86 7 13 1.9 2e+04 -3.5 2.0 5 10 578 583 578 583 0.93 8 13 0.0092 98 3.9 9.6 1 11 589 599 589 611 0.91 9 13 1.6e-10 1.7e-06 28.7 15.9 1 19 616 634 616 634 0.98 10 13 2.7 2.9e+04 -4.0 1.9 6 10 663 667 662 668 0.52 11 13 0.00028 3 8.8 10.1 10 19 681 690 679 690 0.91 12 13 4.3e-07 0.0045 17.8 19.1 1 18 726 744 726 748 0.96 13 13 0.0027 28 5.6 17.0 1 18 755 773 755 774 0.93
Sequence Information
- Coding Sequence
- ATGTCACAAGCAAGTGGACAAGTGAGTGCTTTTACAATAGAAGGAAGAGATGCAGGAGAAGCTCAGGCCATTGCtcttaattcaaatttaacacCTCTGGCCAAAGAATTTACTCCGAGTGGCAGCGGTAGTAATGGtaatagtaatattaaaaaacaggGAGCTGTTAAAAAGGGCTCGTATTGGAATAGAGATTATCGATATAATGAGAACAAGCAACACTATGGAAATTATGAAGGTAGTAGTGGAAGTAGTAGATTTTATGAACAAAATAGTGAATcttttacgaataaaaatcgtaattttagtagaaataattattttaaagattttaatagaagcggtaataaacaaaataaaataattaaggaaaataaaaagtttttggagCAGACGAAGAATAACGGTAAATCTCCAGAGAGCCTTTCCGAACTAAACTCTTTTAGAAATCACGAAAATAatggtaataataattttgcacAAAGTGAACCGGATATTGCAgttaagtataataataagcaTAGCTACTCTAATGATCGAAGGAGCTATAAAAATTCttacaagaaaaattataacgaaTACGAGAGCAAAAGCAAGGAGAGCGAGTCATTTACAAGGCGACACGACTATGAATTTAAGGGTAGTAATAAAAGGCACGTCAATAGCcaagaaatagaaaatgaaGAGAGGCGTGTGCCAACTGAAAAGAAGTCCCccaattatcaaaaaaatttcatgaaaaaatTGGATGCGGCATCCCAAAGAGAGCGATTGGAACAATTAATCGCTTGCAGGCTGCTCGAGTGTTTAGTTTGCTGTGAAAAAGTACGACACACCGATCAAATCTGGTCTTGTAAGCAGTGCTTCCACATTTTGCATCTACAGTGTGTACGTCGCTGGGCTCTGTCTTCCAAACTGCAGAGTGGGTGGCGTTGTCCGGCTTGTCAAAATGTCTACGAAACCATTCCGCAAGATTATCTTTGTTATTGTGGTAAACGTACAAATCCGTTTTTAGAACCTGGTGGAACACCCCATAGTTGTGGCGACGTATGTGGTCGTAAAGGACGGAATTGTTCACACAAATGCACGATCCTCTGCCACCCAGGACCTTGTCCCGATTGCAGTATTATGGTACCTCGTTCCTGTGGATGTGGAGTAGCTGCGCCTATAGTTAAATGCAGTTCCACTGTTCCAATAGTATGTAAAAATTCCTGCAAGAAACTTCTAGAATGTGGACTTCATGGGTGCGAAAAGAAGTGTCACATCAACGACTGTGGACCTTGtgcgataaatataaaacaagaaTGTTTTTGTGGAAAAGAAGGTCGTAAAGTAAAATGTACGGTAGAGATTCAGGGTGCTAGCAAGTACAGTTGCGGAGAACCGTGTGGTAAATTGTTGTCGTGTGGAAATCACAGGTGCGAAGACACTTGCCATACGGACCTATGCAAGCCCTGCTGTTTGGATCCGACTATAATCACCACTTGTCCTTGTGGACAGacgaaattaattagtaaaagaAATTCATGCCTCGATCTGATTCCGTGTTGTGATAAGAaatgtaacaaaaaattaccgtGTGGTCAACCTGCTGCTCCCCATCTTTGCAAATTTCAGTGTCACGAGGGTCTGTGCCCTCAATGTTCTTTAACGACCATAATGCGATGTCGCTGTGGACATATGGATAAAGAAATACAGTGTTCGAAGGTCACCACAAAGGCGGATGATGCACGTTGTGAAAAAAAGTGCACCAAGaaacGGCTTTGTGGCAAACACAAATGCAATCAATTTTGCTGTATAGAAGTGGATCACATCTGTCCTTTACCCTGTAACCGTTTATTATCGTGTGGGCAACACAGATGTGAGCAGCCGTGCCATAAGGGACGCTGTCCGCCTTGTTGGAGATCCAGCTTTGAAGAATTATACTGCGAATGTGGCGCTACCGTTTTATATCCGCCTGTCGCGTGTGGAACCAGGCCTCCCCCTTGCGATCAACCCTGCTCCCGACCACGGTCCTGCGATCACGAGGTGTTTCACTCGTGTCACACGGGCCCTTGTCCGCCTTGCACGGTTTTAACCAAACGCTGGTGTCACGGTCAACACGAACAACGTTCCACAATTCCATGTCATCAAGATACCTTCAGTTGCGGGTTGCCATGTGGCCGCAACATGTCGTGTGGAAAACATAAGTGCATACAACCTTGTCATACAGGTCCGTGCCGAACCCCTTGTACTCAACCTTGTTTAGAACCACGTACAATGTGCGGACATCCTTGTAATCAGCCTTGCCACGAGCCACCTTGTCCCGAAACGTCATGCAAGAAATCGGTGACAGTTACCTGTCAATGTGGATTGCGAAAAAGTGCTCGTGTGTGTGTCGAACTTGCAGGGGAATATCAAAGTATTGCTATGGCACAGCTCGCATCCAAAATGGAAGAAATACAACTCGGACATTCTGTGGACGTTTCAGATTTAGTTAAGGCACCGAAAAAAGTAAATCTCAAAATATTAGACTGCAACGAGGATTGTCGAATACTGGAACGTAATAGACGTTTGGCCATAGGGCTGCAAATTCGGAATCCAGATATAAGCGCGAAATTAACGCCCCGCTATTCCGATTACATGCGGAGTTGGGCTAAGAAGGATCCTAAATTTTGCCAGCACGTTCATGAAAAATTAACAGAGCTGGTGCAATTGGCTAAGCAGAGCAAGCAGAAGAGTCGTTCTTATTCGTTCGAGTCCATGAACCGGGATAAACGTCATTTCGTGCACGAATATTGCGAGCACTTTGGTTGTGAAAGTGCTGCTTATGATCCGGAACCGAATCGTAACGTCGTAGCGACGGCTTTCAGAGATAAATCGTGGTTGCCCAGTTATAGTTTGCTGAAAATCATACAAAGAGAAAGTGGACAGAGAAAAGTGCCGGGGCCCCAACAACTCGGAAAGGTAAGCGCTTCTAAATCCGAAACGGTGTCTCTAAAGTTGCCTGGCCGCATTGCTCGGCCTCCAACGCCGCCTGGCGAGTACgtcgattattttaacaatccTCCAGAGTGA
- Protein Sequence
- MSQASGQVSAFTIEGRDAGEAQAIALNSNLTPLAKEFTPSGSGSNGNSNIKKQGAVKKGSYWNRDYRYNENKQHYGNYEGSSGSSRFYEQNSESFTNKNRNFSRNNYFKDFNRSGNKQNKIIKENKKFLEQTKNNGKSPESLSELNSFRNHENNGNNNFAQSEPDIAVKYNNKHSYSNDRRSYKNSYKKNYNEYESKSKESESFTRRHDYEFKGSNKRHVNSQEIENEERRVPTEKKSPNYQKNFMKKLDAASQRERLEQLIACRLLECLVCCEKVRHTDQIWSCKQCFHILHLQCVRRWALSSKLQSGWRCPACQNVYETIPQDYLCYCGKRTNPFLEPGGTPHSCGDVCGRKGRNCSHKCTILCHPGPCPDCSIMVPRSCGCGVAAPIVKCSSTVPIVCKNSCKKLLECGLHGCEKKCHINDCGPCAINIKQECFCGKEGRKVKCTVEIQGASKYSCGEPCGKLLSCGNHRCEDTCHTDLCKPCCLDPTIITTCPCGQTKLISKRNSCLDLIPCCDKKCNKKLPCGQPAAPHLCKFQCHEGLCPQCSLTTIMRCRCGHMDKEIQCSKVTTKADDARCEKKCTKKRLCGKHKCNQFCCIEVDHICPLPCNRLLSCGQHRCEQPCHKGRCPPCWRSSFEELYCECGATVLYPPVACGTRPPPCDQPCSRPRSCDHEVFHSCHTGPCPPCTVLTKRWCHGQHEQRSTIPCHQDTFSCGLPCGRNMSCGKHKCIQPCHTGPCRTPCTQPCLEPRTMCGHPCNQPCHEPPCPETSCKKSVTVTCQCGLRKSARVCVELAGEYQSIAMAQLASKMEEIQLGHSVDVSDLVKAPKKVNLKILDCNEDCRILERNRRLAIGLQIRNPDISAKLTPRYSDYMRSWAKKDPKFCQHVHEKLTELVQLAKQSKQKSRSYSFESMNRDKRHFVHEYCEHFGCESAAYDPEPNRNVVATAFRDKSWLPSYSLLKIIQRESGQRKVPGPQQLGKVSASKSETVSLKLPGRIARPPTPPGEYVDYFNNPPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -