Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: -
Assembly: GCA_036326145.1
Location: JARFJA010000001.1:26101635-26106540[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.1 8.5e+02 1.6 0.0 3 23 112 133 111 133 0.89

2 15 0.00066 0.061 14.6 0.1 1 23 175 198 175 198 0.97

3 15 5 4.7e+02 2.4 0.2 3 21 206 224 205 225 0.92

4 15 4.7 4.3e+02 2.5 0.3 1 23 236 258 236 258 0.91

5 15 9.5 8.9e+02 1.5 1.1 2 23 292 315 291 315 0.83

6 15 0.00063 0.059 14.7 4.6 1 23 318 341 318 341 0.96

7 15 0.019 1.8 10.0 2.1 2 23 348 370 347 370 0.95

8 15 0.0061 0.57 11.5 4.8 1 21 493 513 493 514 0.95

9 15 0.00066 0.061 14.6 2.2 2 23 526 548 525 548 0.94

10 15 0.053 4.9 8.6 1.2 1 23 551 574 551 574 0.96

11 15 5.1 4.7e+02 2.4 0.2 1 23 604 627 604 627 0.93

12 15 0.56 52 5.4 0.4 2 23 634 656 633 656 0.94

13 15 0.13 12 7.4 0.9 2 23 665 687 664 687 0.94

14 15 7.3 6.9e+02 1.9 0.2 3 23 694 715 693 715 0.91

15 15 0.25 23 6.5 0.9 1 23 953 975 953 975 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.1	8.5e+02	1.6	0.0	3	23	112	133	111	133	0.89
2	15	0.00066	0.061	14.6	0.1	1	23	175	198	175	198	0.97
3	15	5	4.7e+02	2.4	0.2	3	21	206	224	205	225	0.92
4	15	4.7	4.3e+02	2.5	0.3	1	23	236	258	236	258	0.91
5	15	9.5	8.9e+02	1.5	1.1	2	23	292	315	291	315	0.83
6	15	0.00063	0.059	14.7	4.6	1	23	318	341	318	341	0.96
7	15	0.019	1.8	10.0	2.1	2	23	348	370	347	370	0.95
8	15	0.0061	0.57	11.5	4.8	1	21	493	513	493	514	0.95
9	15	0.00066	0.061	14.6	2.2	2	23	526	548	525	548	0.94
10	15	0.053	4.9	8.6	1.2	1	23	551	574	551	574	0.96
11	15	5.1	4.7e+02	2.4	0.2	1	23	604	627	604	627	0.93
12	15	0.56	52	5.4	0.4	2	23	634	656	633	656	0.94
13	15	0.13	12	7.4	0.9	2	23	665	687	664	687	0.94
14	15	7.3	6.9e+02	1.9	0.2	3	23	694	715	693	715	0.91
15	15	0.25	23	6.5	0.9	1	23	953	975	953	975	0.96

Sequence Information

Coding Sequence: ATGGATACGAAACTCTGTAGAATATGCGGAAAACTGAGTGAAAATTACGTACACATTTTCAAAACTGAAGGattaaagaacaaaattgaaacatgCTTGCCtatttttGTAACTCAGTTCTGTTTACTGCCAGACACGATATGTTCAGAATGCCTGGAAAACGTAGACAATTTCTAcagtttcataaaaaattgtttacaaaacATAATTGTCTTAGAAGCTCAATACGATATAACAGAATCGTGCTTGAAGACTAAAAGGAAACATGAAAAAGGCTGTCTTACAGACCTTTCGACaGTTGAACAAGAAATTGGCAATTTTCTACCTCAGTTGTGTTTGTTATGCGATCTACAATTTATGGGACCGACCATGCTTGCTAGTCATGTATATGAAGTGCACGGCATCGATATGGCACAGATAACGTCCAACGAacgcaaaaagaaaattcctAATCTTGTGAAAATCGCCGATCTCAAAGCAAAAGACCAATCCATGGAAGGTCCTCCCACGCTTCAACCGACTTTCGTCTGTCCGATATGCCCCGCGGTTATGACAAATCGCTCTGATCTCTTTACCCATTTAAAAGTGAAACATAACAGGCATGCTGCTCTTTTATGTGGGCTATGTTTACACGTTGCTACCTCTTACACAAATCTAACTACTCACCTAGAAACTTGCAAACCtcaacataatattaactCCAGgtatatttgcaaaatttgttcGTATCACGATGATAATCCTAAGACAATCGAAAATCATATTGCGGTTCATGATTTTATTCTTGCCTTTTGTAAGAAGCAGCCTAAAATGTTTGATCCGTGTgattatattgaaattaacaataattgtgAAAATGCCGGTAAAACGTTAACTTGCACAGAATGTAATCAAGATggttttgttacttttaaagAGTTCAGTACACATCGACGCAGTCAGCATCAAATATTTCATTGCGACctttgcaataaattttacggCCGTAACTCTCACTTATGGAAACATGTTAATAGACTACATAAGGGCCATCCAAGCATCACTTGCCAACTATGTTACAAGACGAGTGCCTCTAAATATCATTTAGCGCAACACTTCAATAAGATCCACAGCGTCAAATCGTcctttaaaccaaaaattgtCGATGGGTCGCAGGAGAGTGCCGAGAACTTTATGAACCAAAAGTTTCAGGGATTCGATTTTCAATCGGTCAGACAAAGTTTCATGAAGCAAGATTTATTGGAACAGGAGCGTAAATGTCAGACAATCAGCGATGAAGGAACTTCAGATGCAGATGATATATTAAAAGTTGAGGTAAAAACCGAGGAGGTGGAATGTTCAGACTTGGAAATCTTCACCGATGAAATTCTAGTAAAAAAGCGGGCCGTCGTTTATCCTCCAAAGGAAATCGACGCTTCTAGCGATCTgtatacaaatataattacaaaCTATACTCCTCCACAAAACGAAGGAGAATACAAATGTCCAAAGTGCTTCAAAGGTTTCCATAAAAAAACTCTTCTGAAAAAGCATAAGAAAAACTGTAGACCTAGATTACAAAAGGATCTGTTGACACGGTGCAAGACCTGTTCGCGCATTTTCAAAGATAGACAAAGCCTGACTAAACATCTAATCAACTATCATTCTGAATATACGTGCGAAATTTGTGGTCAAAAAGTACAAAGCAAGTGCGAGATCGTCTCGCATATACGATTTTCACATCCTAATTGCCATCTTTTCTGTCATTGCGGTAACATCTTACGTAGTAAAATCGATCTACTCGAACACAAAAATGATCATCGCAATTCTTTTGTTTGTCAATTCTGTGCCGACATGTTACCgactaaaattaaacttaaaatgcaCATATTGAGTTTGCATCGTAAAATATTAAGCTTAAGTTGCGgtatttgtttgaaattatttgaaacGCAACATATATTGCGCGATCATGTCCGATTGGTTCATAAGGACGAGTTATTACCGCTCACTTCGTGTACAGTTTGTGGCAAAAATTACGGATCGAAATGGAAAACTTACGATCACTTAAATAAATCGCACGGACGAATTTTTAAGGCATGTAAATCTTGTTTAGACGTTTTTGATACCGACGAGCAACTTCAATCGCATTTTGAAACTGCCCATGTAAATATGCCACCGACCAAATCGAACGTAAACTTTCAAAATACATGTAACACCGTCAACACGAGCACCGTTAGGAAAGACTTGTATGAAAGTGACGCATTGGAGGAAACCGAGAAGAATTCTTCGAGCGAGTTCTCGAACGACGTTGATGAATTTTCACAGTATAATACAAAAGGCGATATAAATCTTAGCGAGGAGGAAGAGATGATGACAACTGCAGTAGTGTCATCTGGCAAACCGCAGGATTATCTCGATATTGCTAGtgttgaaaacaaaatttcgcTGTTGGAAAAACGATTGCTGGGCAATAAAAAGTTATCCGAAGGTGAATCCAATGTGCAAGCTATCATCGCGAGTTTTTCGCAGAATAAGAATTCGGTGGTGCCACCTAAGaaattaaaaattgaggAAACATTTATAAAGCAGAAAAAGGAATCATCCAAAGATAAAAAATCTTCAAAGACCACAGAATCAAATACCACAAAAAAAGATACAGACATGGATCTAGACTCGAATACTCAGACACCATTGCAGAATAGTTCGAAACGTACAGTATATGTCAACAGTAACGACCCATCGCTTTGTGAAATATGCCTAAAGACGTGGCCCGCCAAAAACATCTCTGGCAGCATTATATTCGATGTCACAAGACTGTGGCAGCAACGGGAGAACCACCCGACCTTGCTACACGGACAAGGCTTcggttcaaattttatttgcagaaTTTGCGGCAGATACCATAATGCCAGTTCAAAACTGAAGTTACACATGGCGATCCACGAAAATTTCAATTGGTCCATTTTGGAGGaagaaatcaataaaaaagaaGTTCTCAAAGAAACATCTACCAATGGATATTTAGATGAAAATGGACAATCGCAACACGATTCGATGTATTATGGAACTTCGCAGATTGCAAATCAAGATCACGACGACATCAACTACGAAAGTCTCATCGAGCAAGTGGAATGTTCGTCCGACTCGGATATGGAGGAAGggaaatttttggaaaatcacCTTGCTAAAATGATGAATTCATCATTTGAAGACGAAAGCGACAACGAATCAACTATCACGGTGTCCGAGGAGAACTCATTAGAAAGTCAGATGTTGCAGAATATGCTCAAGGAAAAATTTGCTACAGATCCAAAAGTAACAGAAGAACTGAACATCAAAAGAGAATATTCAAGTTCCGATAGCGAAGAAAGTACGGATTCTAATGAGAGTTTATCCGATACTGAGGGAGAAGTTCACGTGAAAAGCAGCACGGATGAAGATAATTCTCGATGTTCAATTACTTCGCAAATGACTGAAAAATGCGAACTAGATCAAAACGGTAAGTCAAATTCGAATATATTTGTACGAAAATCTGAAGAATTGGATTCGGCAATTCGATCTATCAGCTGTGAGCAGATTAGTCATGTCCATGAGCCGTTAGACGTTGATATCTGTGAAATACAACCTCACACTTTAAATCAGCACGAACTCCAATCGGCAGTAGATAGTATACTTTAG
Protein Sequence: MDTKLCRICGKLSENYVHIFKTEGLKNKIETCLPIFVTQFCLLPDTICSECLENVDNFYSFIKNCLQNIIVLEAQYDITESCLKTKRKHEKGCLTDLSTVEQEIGNFLPQLCLLCDLQFMGPTMLASHVYEVHGIDMAQITSNERKKKIPNLVKIADLKAKDQSMEGPPTLQPTFVCPICPAVMTNRSDLFTHLKVKHNRHAALLCGLCLHVATSYTNLTTHLETCKPQHNINSRYICKICSYHDDNPKTIENHIAVHDFILAFCKKQPKMFDPCDYIEINNNCENAGKTLTCTECNQDGFVTFKEFSTHRRSQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLAQHFNKIHSVKSSFKPKIVDGSQESAENFMNQKFQGFDFQSVRQSFMKQDLLEQERKCQTISDEGTSDADDILKVEVKTEEVECSDLEIFTDEILVKKRAVVYPPKEIDASSDLYTNIITNYTPPQNEGEYKCPKCFKGFHKKTLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLTKHLINYHSEYTCEICGQKVQSKCEIVSHIRFSHPNCHLFCHCGNILRSKIDLLEHKNDHRNSFVCQFCADMLPTKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLVHKDELLPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKACKSCLDVFDTDEQLQSHFETAHVNMPPTKSNVNFQNTCNTVNTSTVRKDLYESDALEETEKNSSSEFSNDVDEFSQYNTKGDINLSEEEEMMTTAVVSSGKPQDYLDIASVENKISLLEKRLLGNKKLSEGESNVQAIIASFSQNKNSVVPPKKLKIEETFIKQKKESSKDKKSSKTTESNTTKKDTDMDLDSNTQTPLQNSSKRTVYVNSNDPSLCEICLKTWPAKNISGSIIFDVTRLWQQRENHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFNWSILEEEINKKEVLKETSTNGYLDENGQSQHDSMYYGTSQIANQDHDDINYESLIEQVECSSDSDMEEGKFLENHLAKMMNSSFEDESDNESTITVSEENSLESQMLQNMLKEKFATDPKVTEELNIKREYSSSDSEESTDSNESLSDTEGEVHVKSSTDEDNSRCSITSQMTEKCELDQNGKSNSNIFVRKSEELDSAIRSISCEQISHVHEPLDVDICEIQPHTLNQHELQSAVDSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -