Rgig009592.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
PRIM1
Assembly
GCA_036326145.1
Location
JARFJA010000021.1:1235782-1240908[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00094 0.087 14.1 1.0 2 23 672 693 671 693 0.96
2 9 0.0068 0.63 11.4 2.6 2 23 700 721 699 721 0.97
3 9 0.00036 0.033 15.4 3.1 1 23 727 749 727 749 0.99
4 9 0.00014 0.013 16.7 1.2 1 23 755 777 755 777 0.98
5 9 0.0084 0.78 11.1 3.1 1 23 783 805 783 805 0.99
6 9 0.029 2.7 9.4 4.9 1 23 812 834 812 834 0.97
7 9 0.01 0.93 10.9 5.9 1 23 840 862 840 862 0.98
8 9 4.6e-06 0.00043 21.4 1.6 1 23 868 890 868 890 0.98
9 9 0.00018 0.016 16.4 3.2 1 23 896 918 896 918 0.97

Sequence Information

Coding Sequence
ATGTGTGAATATTTCGAAGAAACCCTACCGGACTTACTACCGCTGTACTACAAAAGGCTGTTTCCGTTCGAGTTGTTTTATAAATGGTTGAGTTACGGTAACGCTTCTTACTTCCAGATGCGCGAGGTGTCGTTCACCCTTCTGGGCGACGTATACCTACGCTTTCTCTCGTTCAACACTCCAGACGAATTCAAGCAGGAGCTCGTCAAGAAGTTCCCGGTGAAAATTGATATAGGAGCCGTGTATTCCTGTCGACCGAAGGAACGTCGTTCCGTCAACATATTCTCACCACTCGAAAAAGAAATTGTGTTCGACATAGACATGACCGACTACGATGACGTTCGAACGTGCTGTAAGGAGGCCAACGTCTGCCACAAATGTTGGAAATTCATGATCGTTGCTTGTAAAATAATCGACACAGCCTTGCGAGAAGATTTCGGTTACAAACACATGCTGTGGGTGTTTTCTGGTCGACGCGGTATTCATTGTTGGGTCTGCGACGAAAGCGCCAGAAAGTTAGACGATATGTGCCGTTCGGCCATCGCcgaatatttacaaataataaaaggcGGTGCAAGTCATTCGAAAAAGGTGAAACTACCCGGTCAAAAAATGCACACTTCTATTAGACGTGCCGtcgaaattatcgataaatatttcGTCGAATCGATCGTCGTTGAACAAGACATCTTAGGAACAAATGAACGATTGAAAGATTTTTTACAGTTAATCGACGAGGAGATGCGATCATATTTCAAAGACGCTATGACCCCAGTGCCGACGTCCGCTGGACGATGGAACGCTTTTTTGAAGGAACTCAATCATTTACTGACTACGCAAAAGAGAAATCTGATGAGGAACCAGCTTCATCTGAAGGAAGAAATAATGCTGCAATACGCGTATCCGCGTTTAGACATTAACGTGACAAAGGAGCGCAACCACCTGCTCAAAGCGCCATTCTGTGTACACCCAAAGACCGGCAAAGTTTCAATCCCTTTCTCGCCAAAAACTGTCGACCGGTTGGATCCGCATTCGGTGCCGACGGTCAGTTTGCTTACCAACGAAATTAACATGTACGATGCTAAAACGAAAGAGCAAGAGTTGAGCATGAATGAATCGCAGTTGGAGGAAGGAGTCGTGAGCGTCAGAACCATAAAGGATTACAAAAAGACAAGCTTGTTAAAGCCGGTGAGTTATTTCTTGGAATTTCTGAAGGGCTTGGAGAGGAGTCGAACTGAGTTGCATAATGACTCTACCACTCCTGATGTAGATCCTGCACGTCAGAAAAAGTCCAACAATAACAATCCTAAACAGTCATGTACTACTATGGATGTTGATTGTATATCCACCCAAGATCCTGCCACTCCTGTCGATCCTATGAATAAGAATACTGAATGCCCTTTGCCTTTTCGCTTTGAGCTAACTTTATCAAGTAGTGATACAAAAATGACATTGTGCAATACCGAAAATTCATTACCACCCATGACGTGTCTTCGTCGAATAACTGGTCAATTTACTGAAAAGGAATACGGGCACGACCTCAACCAGCTTAAACACAAACTCATGATTTGCGTTCCCGAAATAAATCTATGGACACTATCCAATCTAAGAATATGCAACGAGTGCGATGCAGCGCTTGCTGTTGCTTACAACTTCAAGAGCCGGTGTAGagaaatcgaaaacaaaattaacggCTGCATTCGAACATACGGTGTCGTCGATTTCACTAGTCTGATCGGTAAAAACGAAGTCAGGGACGTAAAAGTGGaacatttaacaattaaacagGAAGAGATCATTTTGGACGAGGACAATTCAGATCGTAATTTAGCGACACATTCGGAGTGCAAATCTAACTGCGATAACGTTAAAATATGTGCAGAAGAGtcaaacaaacgtttattgaCATGCGAAGTAAACAAAATTCTCGAGTACTCCAGTTGGGAGTATATTATGCAAAATGATTCTTACTTAAAAGAGCatcaactaaataatttaatggagaAACAGCTTAGCTGTGCGGACTGcgaatataaaacaaataaaagatCAAACTTGAGACGACACGTTATAAAACACttagataaaaaattgttgaaatgcACACAGTGCGATTACAAGACCAATTACAAATCCTATATGAAACAGCACACCATGATCCATACGGGCGAGAAACCGTTCAAATGTTCACAATGCGATTATAAAGCTAATGAGAAATCGAAATTGAAACGTCACCTCAAGACCCACACAGGCGAGAAACCGTTTAGGTGTTCTGTGTGTGATTACAAATCCGGCTATAAGTCAAGTTTAAGACGACACCTCATGATCCACACCAACGAAAAACCGTACGAATGTTCGAGGTGTGATTATAAGACGATCGAGAAAAAATGCCTTACGAATCACATTTTAACGCACTTCGAAACCAAGAAGCCGTTTGAGTGTTCAAAATGCGATTATAAGACGCACGATAgacaacatttaaaacagcATGGCATGATTCACACAGGCGAGAAACCGTTTCGGTGTACGATGTGCGACTTTAAAACCAGCTACAGGTCGTGTTTGAAACAGCATGTCATGAAACACACGGGCGAGAAACCGTTTCGGTGTTCGATTTGTAATTATAGGACGAGCGACAGGTCAAGCTTGAAAAAGCATATTAATATACACACGGGCGCGAAGCCGTTTCATTGTTCGATGTGCGACTATCGGACTAGTGATAAATCAAGCTTGAACAAGCACATCTTCATTCACAAGCGAGAAAAACAACCGGAGCGTTCGCAGTGCAATTATAGAATTAAACACGAATCGAGTTTGAAACGCATGTTCATATATACAGTAGGGAGGGGTCGtttgaatgtttaa
Protein Sequence
MCEYFEETLPDLLPLYYKRLFPFELFYKWLSYGNASYFQMREVSFTLLGDVYLRFLSFNTPDEFKQELVKKFPVKIDIGAVYSCRPKERRSVNIFSPLEKEIVFDIDMTDYDDVRTCCKEANVCHKCWKFMIVACKIIDTALREDFGYKHMLWVFSGRRGIHCWVCDESARKLDDMCRSAIAEYLQIIKGGASHSKKVKLPGQKMHTSIRRAVEIIDKYFVESIVVEQDILGTNERLKDFLQLIDEEMRSYFKDAMTPVPTSAGRWNAFLKELNHLLTTQKRNLMRNQLHLKEEIMLQYAYPRLDINVTKERNHLLKAPFCVHPKTGKVSIPFSPKTVDRLDPHSVPTVSLLTNEINMYDAKTKEQELSMNESQLEEGVVSVRTIKDYKKTSLLKPVSYFLEFLKGLERSRTELHNDSTTPDVDPARQKKSNNNNPKQSCTTMDVDCISTQDPATPVDPMNKNTECPLPFRFELTLSSSDTKMTLCNTENSLPPMTCLRRITGQFTEKEYGHDLNQLKHKLMICVPEINLWTLSNLRICNECDAALAVAYNFKSRCREIENKINGCIRTYGVVDFTSLIGKNEVRDVKVEHLTIKQEEIILDEDNSDRNLATHSECKSNCDNVKICAEESNKRLLTCEVNKILEYSSWEYIMQNDSYLKEHQLNNLMEKQLSCADCEYKTNKRSNLRRHVIKHLDKKLLKCTQCDYKTNYKSYMKQHTMIHTGEKPFKCSQCDYKANEKSKLKRHLKTHTGEKPFRCSVCDYKSGYKSSLRRHLMIHTNEKPYECSRCDYKTIEKKCLTNHILTHFETKKPFECSKCDYKTHDRQHLKQHGMIHTGEKPFRCTMCDFKTSYRSCLKQHVMKHTGEKPFRCSICNYRTSDRSSLKKHINIHTGAKPFHCSMCDYRTSDKSSLNKHIFIHKREKQPERSQCNYRIKHESSLKRMFIYTVGRGRLNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-