Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: -
Assembly: GCA_036326145.1
Location: JARFJA010000019.1:4880465-4883375[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6 2.5e+02 3.2 0.1 3 17 49 63 48 64 0.92

2 15 1.7 1.6e+02 3.8 3.6 1 23 139 161 139 161 0.97

3 15 0.0065 0.61 11.5 6.7 1 23 167 189 167 189 0.99

4 15 0.0099 0.93 10.9 2.3 1 23 195 217 195 217 0.99

5 15 0.00014 0.013 16.7 2.8 1 23 222 244 222 244 0.99

6 15 0.0089 0.83 11.0 1.4 1 23 250 272 250 272 0.98

7 15 0.039 3.7 9.0 3.0 1 23 452 474 452 474 0.98

8 15 3.3e-05 0.0031 18.7 2.0 1 23 480 502 480 502 0.98

9 15 0.0011 0.1 13.9 0.3 2 23 509 530 508 530 0.96

10 15 0.0006 0.056 14.7 3.8 1 23 536 558 536 558 0.97

11 15 0.0013 0.12 13.7 0.7 1 23 564 586 564 586 0.97

12 15 0.004 0.37 12.1 1.4 2 23 593 614 592 614 0.94

13 15 1.1 1.1e+02 4.4 4.4 1 23 620 643 620 643 0.90

14 15 0.32 30 6.1 5.7 1 23 649 671 649 671 0.96

15 15 0.079 7.3 8.1 6.4 3 23 679 699 677 699 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6	2.5e+02	3.2	0.1	3	17	49	63	48	64	0.92
2	15	1.7	1.6e+02	3.8	3.6	1	23	139	161	139	161	0.97
3	15	0.0065	0.61	11.5	6.7	1	23	167	189	167	189	0.99
4	15	0.0099	0.93	10.9	2.3	1	23	195	217	195	217	0.99
5	15	0.00014	0.013	16.7	2.8	1	23	222	244	222	244	0.99
6	15	0.0089	0.83	11.0	1.4	1	23	250	272	250	272	0.98
7	15	0.039	3.7	9.0	3.0	1	23	452	474	452	474	0.98
8	15	3.3e-05	0.0031	18.7	2.0	1	23	480	502	480	502	0.98
9	15	0.0011	0.1	13.9	0.3	2	23	509	530	508	530	0.96
10	15	0.0006	0.056	14.7	3.8	1	23	536	558	536	558	0.97
11	15	0.0013	0.12	13.7	0.7	1	23	564	586	564	586	0.97
12	15	0.004	0.37	12.1	1.4	2	23	593	614	592	614	0.94
13	15	1.1	1.1e+02	4.4	4.4	1	23	620	643	620	643	0.90
14	15	0.32	30	6.1	5.7	1	23	649	671	649	671	0.96
15	15	0.079	7.3	8.1	6.4	3	23	679	699	677	699	0.97

Sequence Information

Coding Sequence: atgcgTCCCTTCTGCAGAACATGTCTGCAACCGATAAACGAAGATTCGGGCGCACAGGCAGACGACGAACCAATAGAATTTACCCATAAATTGATGATCTGCATGCCGGAAATCGATTTATTCGCCGTATCCGATGCAAAGATATGCAACGTTTGCAATACTGCCCTTAACACggcttacaattttaaaatgcagtGCCGCGATGTCGAACAGAAAATTACCAACTATTTAAGAGAACACGGCGCTGTCGACCTTAAAAAGATCGTATTCGAAAAATCAGACCTGGGTTCGTTGAAAAACGAATTCGATTTGAACgaagtatttattaaacaagaGGAGATTATTTTGGACGAGGAGGACGATTTTCAAGAATCAGTCGTTAACAGCAATAGCGCCACGAAGCTTAAAGGAAAATACCAATGTTACGAATGCGAATTTGACAGTAATTCGCCATCAAAATGGAAAACCCACTGCAAAACGCACGCGGCAGGTAACCCATACAAGTGTTTGATTTGTGGATTTCAAACTATCGACAAGTCATGTTTTACCAGACATCATAAAACTCATAGTatggaaaaaatatataaatgttcAAGATgcgattataaaacaatagaaCAACGTACGTTGGACAAACACCTACAGAAACACCAACAGAAATCCTATAAGTGTCAGCGTTGCGGTTTTTCCACTACCAATAATAAACAGTTTGTACAACATCAGCGTATTCATGTAGGCGAAAAGTCGTATGTGTGTACTATGTGCATGTTCTCGTGTGCTAGGAAATCGACTTTAAACGAACACGTTCTGATACACGGGGACCTAAAGGCATATACAACGTGTCTTCGAAAAATATCCGATTATACCACAAACTGTGTATTTATCGAGCGCGACTACAAACATAAATTGATGATTTGCGTTCCGGAAATGGTGAGTAAAATTGATAAACTGACAGTGGTTGTTTCATTTCAACTATCGCAGGACTTACGAGTCGTGCCGGATCCAAAGATCTGCAGCGAATGCCAAATAGCTCTTCACGCGgcttaccagtttaaaattcgaTGCCAAGAAGTGGagagaaaaattacaaactatCGAGACAAGTACGCGGATCTTACAAACGTATCGGAGTCTCCAGACATCATTATCAAAAGCGAAACGGCGAACAAGGATTTGTCGCAAACGGAAATGGAAGAAATAGCGATTAAACAAGAAGAAATCGATTTGGATTGTTGTGGCCAACTCGAGAAACGCATAAACGCAGAAAGTTCAGAGCAACGTCGACCTTGCACAGCCAAAAGTAAAAAGGTGAAAAAGAGTTCCGCTAAAACTAAAGACGCATGTAAGAAACCGTTTGAGTGTTTGTTTTGTTCGTACAAGACCAACATCAAGCACAGTTTGAAAAGACACATTCTCATACATACGGGGGAGAATGCTTTCGAATGTACCGATTGTAAGTACAAGACCAACAACAGATCAATGTTAAGAAAACACATTCTCATGCATACCGGCAAGGAATTGCTCGAATGTATGGAATGCGAATATAAAACTGATAATAAATCAGATTTAAGGAAACATGTTCTTATTCATACGGGTGAGAAACCGTTTGCGTGTTTCAAATGCGATTATAAGGCCTGTCGTAAGTCGAGCTTAAAACGACACCTCATGATACACACGGGCGAAAAACCGTATGACTGCGTTAAATGTGAATACAAGACCACCAGTAGATCACTTTTGAACAGCCACTTACTTATACATTCTGACAGAAAACAACTTTCGTGCTTGAACTGCGGATTTAAAACCAATTCTCGTTCGAGTCTGAAAAGGCACGTCACTCTGCACACGAACGAGAAGCCGCATCGGTGTTCGTTGTGCGAGTTTCAAACGCGGTATAGGCAGAGCTTGAAAAAACACTTCGCCCTCAAACACACCGACGAGAAACGGTTCAGGTGTTCGCAGTGCGATTTTAAATCGTACGACAGATGGTGTTTGAAAAAGCACTTCATTAAACATACAAACGAGAAACCTTTTGGTTGCACCATGtgcgattttaaaacaaatcacAAATCGAGCCTGTGCCGGCACGTTTACAAACACGGGGTCCaaaagtcatttgaaagcaTCAATTGGGATTACGCGACAGACGATGTGCATGTATGA
Protein Sequence: MRPFCRTCLQPINEDSGAQADDEPIEFTHKLMICMPEIDLFAVSDAKICNVCNTALNTAYNFKMQCRDVEQKITNYLREHGAVDLKKIVFEKSDLGSLKNEFDLNEVFIKQEEIILDEEDDFQESVVNSNSATKLKGKYQCYECEFDSNSPSKWKTHCKTHAAGNPYKCLICGFQTIDKSCFTRHHKTHSMEKIYKCSRCDYKTIEQRTLDKHLQKHQQKSYKCQRCGFSTTNNKQFVQHQRIHVGEKSYVCTMCMFSCARKSTLNEHVLIHGDLKAYTTCLRKISDYTTNCVFIERDYKHKLMICVPEMVSKIDKLTVVVSFQLSQDLRVVPDPKICSECQIALHAAYQFKIRCQEVERKITNYRDKYADLTNVSESPDIIIKSETANKDLSQTEMEEIAIKQEEIDLDCCGQLEKRINAESSEQRRPCTAKSKKVKKSSAKTKDACKKPFECLFCSYKTNIKHSLKRHILIHTGENAFECTDCKYKTNNRSMLRKHILMHTGKELLECMECEYKTDNKSDLRKHVLIHTGEKPFACFKCDYKACRKSSLKRHLMIHTGEKPYDCVKCEYKTTSRSLLNSHLLIHSDRKQLSCLNCGFKTNSRSSLKRHVTLHTNEKPHRCSLCEFQTRYRQSLKKHFALKHTDEKRFRCSQCDFKSYDRWCLKKHFIKHTNEKPFGCTMCDFKTNHKSSLCRHVYKHGVQKSFESINWDYATDDVHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -