Rgig009620.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000021.1:1378334-1380996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.7 3.5e+02 2.8 0.5 2 23 187 208 186 208 0.90 2 20 0.0062 0.58 11.5 1.3 2 23 215 237 214 237 0.92 3 20 0.007 0.66 11.3 3.3 1 23 243 265 243 265 0.98 4 20 7.5e-05 0.007 17.6 3.1 1 21 276 296 276 297 0.95 5 20 0.011 1 10.8 0.2 2 23 307 328 306 328 0.97 6 20 0.089 8.3 7.9 2.1 2 20 339 357 338 360 0.91 7 20 0.08 7.5 8.0 1.9 2 23 395 416 394 416 0.97 8 20 0.11 9.9 7.6 1.6 2 23 429 450 428 450 0.95 9 20 0.033 3.1 9.2 0.5 1 23 455 477 455 477 0.97 10 20 0.0012 0.11 13.8 1.9 1 23 489 511 489 511 0.95 11 20 0.00037 0.035 15.4 3.0 1 23 517 539 517 539 0.97 12 20 0.24 23 6.5 4.0 2 23 574 595 573 595 0.95 13 20 0.2 19 6.8 0.5 2 23 602 623 601 623 0.95 14 20 0.00019 0.018 16.3 6.7 1 23 654 676 654 676 0.99 15 20 3.3 3e+02 3.0 1.3 2 23 681 702 680 702 0.91 16 20 8.1e-05 0.0076 17.4 3.4 1 23 717 739 717 739 0.98 17 20 0.0071 0.67 11.3 0.6 2 23 746 767 745 767 0.96 18 20 0.0058 0.54 11.6 0.4 2 23 782 803 781 803 0.97 19 20 8.9 8.3e+02 1.6 1.9 1 19 809 827 809 831 0.88 20 20 1.3 1.2e+02 4.2 1.3 1 23 837 859 837 859 0.97
Sequence Information
- Coding Sequence
- ATGTTCTGCAGGACCTGTCTGCAACGTATAGCCAGTAATTTCTGCAACATAGGGTGCGATGAGGAACTGGAAAATTTCAAACATAAACTTACGACCTGCGTTCCTGAAATAGATTTCTGGGCCGTGCCCGACGCCAGAATGTGCGCCGATTGTTACGAGGCTCTCGATGCAGCGTACAAGTTCAAAACTAAATGTCAACAGGTGGAGAGAAAAATCAGTGATTGTTTGAAGGAACACGGCGTGATCGATCTGGTGCACTTATTAGATCCTGCCGATGTAATCGACGAAATAGTAATTAATGTAAGGGATCGTGGTGCCGAATGGCCCACCGGCGAGTTACCCAATTTGAAAATGGAGGATTTGACCATTAAAGAggaagaaattattttagaagaCGATAACGTACAAATTAACGTTGTTGACGACGACAGCGTTATTGTAGTAAAAGAACACGAGTCTGTGTCGAATGATATACTGCCGATCGATTACGGGTCGATAACAAATGCCGAATTACAGTTAGTAACTCATCAGCTTACGAGCGTCGCGAGCAGTCCGTTACAGTGCACTAAATGCAGTTATAAAGCGATCACTAaattaattctgaaaaaaCACTTAATTGCTCATAATAAAAAaggaataattaaatgttcgATATGCGGTTATATTACACAAAACAGTAGTCACATGGAGCAGCATCAATCTTTTATGCATTCTGCAGAGAAATTGTTTCCGTGCGTGATGTGCGACTTTACGACTCATCGTAAACGCGATTTTAGAAAGCACGTTCGAATCCACTTGCAACCGAGAAAATccgttaaaacaaaatttcgatGTTCACGATGCAATTGTACGTTTAGTAACCAAGGTAATTTGAATAGGCACGTAAAGAATACGTGCGTGCGAAGCGTGAAGCGAATCAAGTGCGAAGAGTGCGAGTTTGAAACTACCGAAAAGAAGTCTTTGGAACAGCATCTTCTCGTACATAAACcggataaattaaaatcgaaactgTTGACGTGCACGAAATGTTCGTACAGCACCTATAGCAGTGTGCATTTAAGTAAGCACGTTCCGCGACACAATCAGAAAGCTTTGAAATGTTCCGAATGCAAATATCTGACCTTAAGTAGTTATCATTTAAATCGTCACTGCCTCACGCACAAAGAGAAGAAACAACCGTCTAAATGTACCGATTGCACGTTTATAACCCACGACCTGTCAACTTTCGAAAGACACGTCGCCACCCacaacgataaattaaaagagAATTTCAAGTGCGTGCTGTCATGCACGAAATGTCGATTTAAGACTTACAACAGCGCATTTTTAAGGAAACATGTTGCAATGCACGACACGAACGCTTTCAAATGTCCAGAATGCGACTATCTCACCTTGTATTGGTCCAGGTTGATTATGCACACTCGTACACACAAACAGCACAAAACTAAAGACaacaaaaaacgatttaaatgctCGGAATGTGATTATAGCACCACCACCGATTATAATTTGCGATTACATTTCGTTAGGCATACAGGCATAAAACCATTTGCTTGTCCAAACTGTACATataaaacttataataaatCGCACTTGAATCGGCACGTGTCGATGCACACGCGCGGAGGAAGATCGAGGTATCCAAAGTACGAGCAGAAGGCCGACGGCAAATCGAAAACGACAGAACACAACAAATCAACGTCGAAGAGAAAACCGTTATCGTGTCTAAAATGTCGTTTCAGTACCCACAAAAAGTCGTTGCTACAAAAACACATTTCCCTGCACGTGTCCAAGAAATTGTTGAAATGTTCCAAGTGCAACTTTAAGACTGGCAATGAAACATATCTGACAATGCACGCCGCAGTTCACACGTTACGTGTTCGTATCTTTGACGATGTCGGGGTGAAGCGCGAAGCGCTCGCGGACGATTATCCACAGAATTACGTGGAGAAAAAAAGGTTTAAATGTCCGAAATGTAATTATCGCACGCACAACAAATCTCATTTAAATCGACATGTTCTTACGCATCGCCAACAATTGAAATGTCCGACGTGTCATTATCAAACCGAAAACAAGTTGATTATGAACCGACACGTCCTTATGCACGTCACAAAACCGAAGTCGAACGGTTGCAATTTAGACGAATTGTTCGAATGCACGAAATGCAACTACAACACGTACAGGAAGGCCAATCTTTATAAACACATTAGGAAACACAAATCGGCAAAGACGTTGGTGTGCGGAGAGTGCagatttaaaactataaataaatcagaATTTAATAAGCATTTATCGGTACATGTGATCAATTGCGTTTCATTGCGAACGACTGCGAACATCCTAACATGTCAAAACTGCGATTACAAGACCGCCCAAGTGTGGAACATGCGAAAGCATATTCTCATGCACGCCGACAaacgacaatttaaatgttcgGAATGCACATTTGAGGCAGACAGCAAACTGTCTTTGGAAACTCATTGTCTCGAGCACAAAGACGAAAAAATTTATCCTTGTCTGAAATGCGAATACACAAGCGATTGTAAAACGACGTTAGAAATACATCAATTGATTCATAAGCAAGTTTATGTTAAACTCGAACCGATTTCGATCTGA
- Protein Sequence
- MFCRTCLQRIASNFCNIGCDEELENFKHKLTTCVPEIDFWAVPDARMCADCYEALDAAYKFKTKCQQVERKISDCLKEHGVIDLVHLLDPADVIDEIVINVRDRGAEWPTGELPNLKMEDLTIKEEEIILEDDNVQINVVDDDSVIVVKEHESVSNDILPIDYGSITNAELQLVTHQLTSVASSPLQCTKCSYKAITKLILKKHLIAHNKKGIIKCSICGYITQNSSHMEQHQSFMHSAEKLFPCVMCDFTTHRKRDFRKHVRIHLQPRKSVKTKFRCSRCNCTFSNQGNLNRHVKNTCVRSVKRIKCEECEFETTEKKSLEQHLLVHKPDKLKSKLLTCTKCSYSTYSSVHLSKHVPRHNQKALKCSECKYLTLSSYHLNRHCLTHKEKKQPSKCTDCTFITHDLSTFERHVATHNDKLKENFKCVLSCTKCRFKTYNSAFLRKHVAMHDTNAFKCPECDYLTLYWSRLIMHTRTHKQHKTKDNKKRFKCSECDYSTTTDYNLRLHFVRHTGIKPFACPNCTYKTYNKSHLNRHVSMHTRGGRSRYPKYEQKADGKSKTTEHNKSTSKRKPLSCLKCRFSTHKKSLLQKHISLHVSKKLLKCSKCNFKTGNETYLTMHAAVHTLRVRIFDDVGVKREALADDYPQNYVEKKRFKCPKCNYRTHNKSHLNRHVLTHRQQLKCPTCHYQTENKLIMNRHVLMHVTKPKSNGCNLDELFECTKCNYNTYRKANLYKHIRKHKSAKTLVCGECRFKTINKSEFNKHLSVHVINCVSLRTTANILTCQNCDYKTAQVWNMRKHILMHADKRQFKCSECTFEADSKLSLETHCLEHKDEKIYPCLKCEYTSDCKTTLEIHQLIHKQVYVKLEPISI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -