Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: SCRT1
Assembly: GCA_036326145.1
Location: JARFJA010000001.1:34445723-34449387[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.5e-06 0.00023 22.2 3.7 1 23 277 299 277 299 0.99

2 5 0.074 6.9 8.1 0.1 3 23 310 330 308 330 0.92

3 5 1.2e-06 0.00011 23.2 0.6 1 23 334 356 334 356 0.98

4 5 4.1e-08 3.8e-06 27.8 0.6 3 23 364 384 362 384 0.98

5 5 1.6e-05 0.0015 19.7 1.1 1 21 390 410 390 411 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.5e-06	0.00023	22.2	3.7	1	23	277	299	277	299	0.99
2	5	0.074	6.9	8.1	0.1	3	23	310	330	308	330	0.92
3	5	1.2e-06	0.00011	23.2	0.6	1	23	334	356	334	356	0.98
4	5	4.1e-08	3.8e-06	27.8	0.6	3	23	364	384	362	384	0.98
5	5	1.6e-05	0.0015	19.7	1.1	1	21	390	410	390	411	0.94

Sequence Information

Coding Sequence: ATGCCACGCTGCCTCATGGCTAAGAAGTGGAAGGCTTATCCGTGGCCCGAGCGGCCGGACCCGCCGGAAGAAGAAGAGGAAGAAATCGACGTTGTAGGTGATTCTTCGGCCGGTTCTTGTTGGGGACCCTCGAGTCCGACCGCAGGGGCAACAGCCCCGAGCCCGCCACCCACTTCTCCGCACGGTACAACATTGCTCTATAACGGCTATCTTCAGGAACTCACTCCTACAAGCTATACAACAACATTTATTCAACGCAATGATCATCAAGTGAACGTTCAAACACATCAACCGTCATATGCAACGCTAAGAACAGTTACAGAAAGTCAAGATCTACGAGCAGAATATAACAATTCGCCGATTCCACAACGCAGTCGAAAATCGTTAGCAATGTGTTTTACTAGCACCGGAGCCGCCCTTTCCCTCCCACCTAAGAAAAAAGATATATATCGACCTTATTCCCTGGACGACAGGCCGCCGCCTCCACCTCGAGTACCCGCCGAAGAAGACTTACATGCCGCCCACGCAATCTTGGACTTGAGCGCTTCGACGACCGTATTTTTACCACCGCCGCCGCCACCTCCGCAGCCTTTACAAATTGTCGATCATAATCCGCTGGTAGACAGAAGGGACGTACCGCGAGAATTGTCCCCGTCGCCGCCGCCGGCCAAAGCCGTTTCCGAAATCGGAACGTATCAAGGAAGCAAAACGGTGGCTTATACTTACGAAGCTTTTTTCGTTAGCGACGGCCGTTCAAAGAAAAGAACGCAAGCCGAAGACCCCATAGGTATACCGCAAAAACCTAGCATTGCTTCCGATAAGCAAAAATATACTTGTTGCGAGTGCGGCAAACAGTACGCCACGTCCAGTAATCTTTCGCGACACAAGCAAACTCACCGAAGTCTAGATTCCCAAGCGGCCAAAAAATGCATAACCTGCGGGAAAGCCTACGTTAGCATGCCCGCATTGGCGATGCACGTGCTTACACATAAACTGCAACATAAATGCGGGGTGTGCGGTAAGCAATTTTCTCGCCCGTGGCTTCTGCAAGGACATCTACGCTCGCACACGGGGGAGAAACCGTACGGGTGCGCTCATTGCGGCAAAGCTTTTGCCGATCGGTCGAATTTGCGGGCTCACATGCAGACGCATTCCGCGGacaaaaatttcgaatgtCCCCGGTGTCACAAGTCGTTCGCATTGAAATCGTACCTAAACAAGCATTTGGAATCGGCATGTTTGAAGGACGACGCGGGCAGCGGTTCCGAAGATGGTGGTTCTATGGTACCGGAGGGCGCCCTTCCGATAAGGGTGCATGCAGGTTAA
Protein Sequence: MPRCLMAKKWKAYPWPERPDPPEEEEEEIDVVGDSSAGSCWGPSSPTAGATAPSPPPTSPHGTTLLYNGYLQELTPTSYTTTFIQRNDHQVNVQTHQPSYATLRTVTESQDLRAEYNNSPIPQRSRKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPPPPPRVPAEEDLHAAHAILDLSASTTVFLPPPPPPPQPLQIVDHNPLVDRRDVPRELSPSPPPAKAVSEIGTYQGSKTVAYTYEAFFVSDGRSKKRTQAEDPIGIPQKPSIASDKQKYTCCECGKQYATSSNLSRHKQTHRSLDSQAAKKCITCGKAYVSMPALAMHVLTHKLQHKCGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECPRCHKSFALKSYLNKHLESACLKDDAGSGSEDGGSMVPEGALPIRVHAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00838921;
90% Identity: -
80% Identity: -