Rgig021320.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000078.1:394167-397527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0029 0.27 12.5 3.7 3 23 187 207 186 207 0.95 2 8 0.002 0.19 13.1 2.9 1 23 213 235 213 235 0.98 3 8 3.6e-06 0.00034 21.7 0.3 1 23 241 263 241 263 0.99 4 8 1.2e-05 0.0011 20.1 3.0 1 23 269 291 269 291 0.95 5 8 0.0002 0.019 16.2 4.0 1 23 297 319 297 319 0.96 6 8 4.3e-05 0.004 18.3 0.4 1 23 325 347 325 347 0.96 7 8 1.7e-06 0.00016 22.8 0.7 1 23 353 375 353 375 0.98 8 8 0.00021 0.019 16.2 6.3 1 23 381 403 381 404 0.95
Sequence Information
- Coding Sequence
- ATGGAACTATTAAATAGAGCAATTACTTCATGTTGTGTATTACACAATTTTGTATTAAGTCGGGACGGAGATGACGATACCGAAGTGGTGGATATTgccgaagaagaagaagaaatggCTCGTATTAACGTACACGAAAGAAGGCGACATGTCTTGGGAGGAAGAAAAAGGGACaggAAAACGACGCCCCAACATAGCCACGATGTTGACCCAAATCGCATCAGTACAAGTAATTATTGCTGTTACGATCGGATGTGGATACACTTCTTTAAGTTGCAGGTCAATCCATACGACGACCTCCCTTGCACCGTTTGCCCGGCCTGTCACGACAAACTGAGCGCCGCCTTCGACTTACGCAAGCAAATCATAGAGGCGGACGCGAAATTGCACGGCGACTGTGGCGGAGGAGCTTTGCGAACCCACGGAATCGATAACGACGCATCAAACGATACCGATACGTCGGTCGACGATCGGTTGCCGCTCAAATTAGCCGAGCAGGATAACAAGCGCGCCGATCTCGAAACCTTGCCCGCGGAGGAAACCCAAAAGAAGAACTTTTGCGCGGAATGCAATAGATCGTTCAGAAATCGCTACTGCTTAAACCTCCACAATATCAAGCATACCGGAATTAAACCGTTCCATTGCGAGGTTTGCAATAAGGGTTTTGCACTGCGTTGCCTCGTGATAACGCACATGCGCAGCCACACGGGCGAACGGCCGTACAAGTGCAAAACTTGCGATAAATCTTTCGCCCTGCAGGGCGGGCTTCGCGCTCACGAGCTCACTCACACTGAGGAGAAGCCGTTCGTGTGCGAAATTTGCAGCAAATCGTTCAAGGGCCACGACAACTTGAAGAAGCACCTGACGTTTCACAACACCGAAAAGAATCACGCGTGTCCGACGTGCGGCAAGCGCTTCAAGAACCTTATATGCGTCCAGCGGCACCGGAAGATCCATTCCGGGAAGAAGCCGCACGCGTGCGACGTGTGCGGCAAAAGCTTTTTGGCCCGAGACTCGCTTAGGATTCACATGCGGATACACGAGGGCGTCAAGCCGTACTCGTGCAAGATTTGCGGGAAACCGTTCACGACCGTCGGCTGCATTGCCAGACACATGAGAATACACACGGGCGAGACGCCGTTCCCGTGCACGGCGTGCGCCAAGAGATTTTCGTATTCGCACCATTTACTGAGACACATGAAGGTGCATCATCCGAATGAGCAGGTTAAAAAATAA
- Protein Sequence
- MELLNRAITSCCVLHNFVLSRDGDDDTEVVDIAEEEEEMARINVHERRRHVLGGRKRDRKTTPQHSHDVDPNRISTSNYCCYDRMWIHFFKLQVNPYDDLPCTVCPACHDKLSAAFDLRKQIIEADAKLHGDCGGGALRTHGIDNDASNDTDTSVDDRLPLKLAEQDNKRADLETLPAEETQKKNFCAECNRSFRNRYCLNLHNIKHTGIKPFHCEVCNKGFALRCLVITHMRSHTGERPYKCKTCDKSFALQGGLRAHELTHTEEKPFVCEICSKSFKGHDNLKKHLTFHNTEKNHACPTCGKRFKNLICVQRHRKIHSGKKPHACDVCGKSFLARDSLRIHMRIHEGVKPYSCKICGKPFTTVGCIARHMRIHTGETPFPCTACAKRFSYSHHLLRHMKVHHPNEQVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -