Rgig000392.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- Prdm15_1
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:2972292-2975310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 27 6.3 0.3 2 23 214 235 213 235 0.94 2 13 0.00014 0.013 16.7 0.6 2 23 241 263 240 263 0.97 3 13 0.00045 0.042 15.1 1.3 1 23 357 379 357 379 0.98 4 13 0.38 35 5.9 6.2 1 19 383 401 383 404 0.91 5 13 0.00015 0.014 16.6 0.7 1 23 412 435 412 435 0.95 6 13 4.8 4.5e+02 2.4 7.6 1 19 439 457 439 460 0.93 7 13 0.022 2.1 9.8 2.2 2 23 471 492 470 492 0.91 8 13 0.001 0.097 14.0 0.2 2 23 506 527 505 527 0.96 9 13 5.8e-07 5.4e-05 24.2 1.9 1 23 532 554 532 554 0.98 10 13 0.053 4.9 8.6 0.1 2 23 560 581 559 581 0.96 11 13 8.9e-05 0.0083 17.3 4.7 1 23 587 609 587 609 0.98 12 13 0.043 4 8.9 3.5 1 23 611 633 611 633 0.94 13 13 0.00018 0.017 16.4 0.8 1 23 639 662 639 662 0.97
Sequence Information
- Coding Sequence
- ATGGATAAACAAGTACTAACGGACTCCggaagtttagTATGCGGAATATGCGGAGAATATCACAAATATTCCAACTGTAATATAGTAGaagtaataaaatacGTGCCCGACAGAGTACCTCCTTCCAAAGCTCGCTTAACATTACCCACGAATGTCGATCTCGAAGTAATGGCAGACGGAAATTACAACGTTAAAgcaaatacttttatttcacGAGGGACACAATTTGGACCTATGGAAgcgcaaaaattattaacattaaaaccCGCTACAGTGTTTCcactaaaattgtttattaatgaaGTGGAAGACTTGTCGGAATATTACTTAGATACCACCGACGAGCATAATTCCAATTGGTTAATATTCGTATCGCCGGCTCTTGATCTAgaagaacaaaatttaatttgttttcaaGAGAACTCGAAAATATTCTACGTAACAATCAAAGACATTCAAGTTGGAGAATTCTTGAGAGTATGGTACGCTCCATATTATGCCGAAAAAATGAATACTAACCTATTGGCAAGTGAAAATGGCCTAGAATggtttaataacaatattctgATGGAGTGTATAGATGTAGATGTAAATAAGCTTTTGAAGGCACAACAAAAGATTATAAATCGCAACAATTGGACCTgtaaattttgtggaaaaaTGGAAAACGACGTCACTCTCTTTGCCAAACACATGCTTGACCATTAcaataagaaacaaaaatgtgaaatatgtaaACAGTTGTTTCCAAATCTACGTGACTTAAAAGAACATATGAAAACGATTCATCCTACGACGGCTGTAAATTCAAAACGGTCTAAACCGAAGACAGTGATatctgaaaatttgaaaactaaagCAGACACCCTCGTGGGTGGTCCGTTACTTAATGAATTGTTAACCGATAGTTTAGATAACACAAATTTGATGTTGCCTAATATAGATATGATAGAGAAtcagaatttattagaatcgGACAGTTTAAGTCTAACGGTTGATAATTTATTGATGGAAAATGTGAAGGAGTTAgatcattttaatttcgaaataggAGATAGTCAAGAACAGCACGTTTGTGATATTTGTCTGAAACCTTTTACAAAGTTAATATACCTGTTGCAACATTTGAGGAAACACACCGGAGAACATATGTGCTGTTCTTGTTTAAAGaTATTCTCACGCTCCGAGAATTTAAAATCGCACAATTGTAAAAACGACGATAAACTGCCGCCGTTTATTTGCAATTACTGCGAGCGCAGGTTCATTCTGAAAAAGTATCTTGTACGACACATTAAAGCGGTTCACGAAAAGAAATACATGTGCGTTAACTGCAATCGCTGTTACTATTCGCATAAAGAATATAAGCAGCATAACTGCTCGGCAATACCTAATAGTCTTAAAGAGACTTTTGCGTGTATCACGtgcaataaaaagtttttcaaaGACATCTACTTGAAGAAGCATATGAGACTTCACGTGCAGAACGACGAAAAAACCGATACGTCGAAAGATTTAATCTGTGACGTGTGTGCACAACGATTTGTAACTAAAGTGGGCCTTCAGCGGCACAAGCAAGTTCACATGGAGCAACCCTTTTCTTGCGAGATTTGCAATAAGAAGTTTTATCGACAGACTGCATTGAACAATCATATCAAAACTCATAACGATAATAAGGTCACATGTTCAGTATGCAATGCTCAACTTAAATCAGAAAAATTGCTAGTAGTCCATATGCTTCAACACACCGGAATAAAACCCTACGAGTGCGATAAATGTTCTCAAACATTCCATCAACGATCGAATTTAGTGAAACACTCGAGAAAACATTTGTTCTCCTGTCATCTGTGCAGCAAGACATTTGATGCAGAAGAGTTGCTTCATAATCATAAAAGTGAACATACCCAAAAAGAAGTGTTCATTTGTCCTCTGTGCGAAAAAGTTATCAAATTGAGGAGTTCGCTTCGAAGGCACCTGAAAAAATACCATAACGAAGTGGACATCGATAAAGTGATGGGTAACATAAAAGCTAAAGAACTAGCTTGTTTCGAagaaaatataactaataAGGATCAACCTGAAGTTCGTTCCGATCCCCAAGCGAATGCCTTGCCTCAAACGGAACCCGATAATTTTCAAAGTATCGTGGATAGTTTCGAAAACATgattaataggtataattcTGAAGAGGACGCTTCTAACTTATTACTGGACACCTATGGAGCTGAAGCCGATTTTAGCGATTTAGGAATTGACATGGATAGTAACTTTGATCTTCAACAGAACATGAATGTAAACGAACACGAAATTTGTTTATCGATGCCCGACTTGACAGAACTGGAACAAGAAATCACTTTGGGAGAAAACGcctatatattaaataaaaatactatcgTCGAACCTAAAGAACAAGGACAAGTTCTCGTTTATGTCTTggataaatag
- Protein Sequence
- MDKQVLTDSGSLVCGICGEYHKYSNCNIVEVIKYVPDRVPPSKARLTLPTNVDLEVMADGNYNVKANTFISRGTQFGPMEAQKLLTLKPATVFPLKLFINEVEDLSEYYLDTTDEHNSNWLIFVSPALDLEEQNLICFQENSKIFYVTIKDIQVGEFLRVWYAPYYAEKMNTNLLASENGLEWFNNNILMECIDVDVNKLLKAQQKIINRNNWTCKFCGKMENDVTLFAKHMLDHYNKKQKCEICKQLFPNLRDLKEHMKTIHPTTAVNSKRSKPKTVISENLKTKADTLVGGPLLNELLTDSLDNTNLMLPNIDMIENQNLLESDSLSLTVDNLLMENVKELDHFNFEIGDSQEQHVCDICLKPFTKLIYLLQHLRKHTGEHMCCSCLKIFSRSENLKSHNCKNDDKLPPFICNYCERRFILKKYLVRHIKAVHEKKYMCVNCNRCYYSHKEYKQHNCSAIPNSLKETFACITCNKKFFKDIYLKKHMRLHVQNDEKTDTSKDLICDVCAQRFVTKVGLQRHKQVHMEQPFSCEICNKKFYRQTALNNHIKTHNDNKVTCSVCNAQLKSEKLLVVHMLQHTGIKPYECDKCSQTFHQRSNLVKHSRKHLFSCHLCSKTFDAEELLHNHKSEHTQKEVFICPLCEKVIKLRSSLRRHLKKYHNEVDIDKVMGNIKAKELACFEENITNKDQPEVRSDPQANALPQTEPDNFQSIVDSFENMINRYNSEEDASNLLLDTYGAEADFSDLGIDMDSNFDLQQNMNVNEHEICLSMPDLTELEQEITLGENAYILNKNTIVEPKEQGQVLVYVLDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -