Rgig024339.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
zfh1
Assembly
GCA_036326145.1
Location
JARFJA010000088.1:25954860-25980968[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.018 1.6 10.1 1.5 2 23 54 76 53 76 0.93
2 9 0.0013 0.12 13.6 0.3 3 23 108 128 106 128 0.95
3 9 3.8e-05 0.0036 18.5 2.2 3 23 136 156 134 156 0.96
4 9 6.3e-06 0.00059 20.9 5.9 1 23 165 187 165 187 0.99
5 9 7.7e-05 0.0072 17.5 1.0 1 21 193 213 193 214 0.95
6 9 0.015 1.4 10.3 0.2 2 19 464 481 463 481 0.95
7 9 7.1e-06 0.00066 20.8 1.4 1 23 839 861 839 861 0.94
8 9 0.00019 0.017 16.3 9.4 1 23 867 889 867 889 0.98
9 9 0.0029 0.27 12.6 4.3 1 21 895 915 895 916 0.96

Sequence Information

Coding Sequence
ATGGTTGCGCGTAGTGAAAGCATGTTTGGGTGCTACGACAGCTACTCGTACAGACTCTGGAGCCTTGCCAACGTATGGAGCACCTGTCAATTTCCATCTTTAACTAATGGCTTAACTAAAGAAGTAGAAGATATTAATTCCACCCCagaatatttcataaaatgtcCGCAATGTCAGAAAGGTTGCCAAAGTTTCCAATCGCTCAAGGAACACATGGAAGCGTCCCATTCCGATTTAAATTCTATAGAAAACGGCACCGGTATAGCCCCCAATTCCGCATCTCCTACGCCAAGCATTATTGGACCTGGAGGACCTTACGGATGCTCGCAATGTGCAACTTCTTTTGTCACGAAAGATCAGTTGGAGAAACACGAACTATTGCATTCTCCTAACGCTCAAGTGtgcTGCAAAATTTGCAACAAAACTTTTGCAAACGTATACCGACTACAACGTCACATGATAAGTCACGACGAAAGTGCGgtattaagaaaattcaaatgcACAGAATGCGAGAAGGCATTTAAATTCAAGCATCACTTAAAGGAGCACATACGAATCCACAGCGGTGAAAAACCATTCGAATGCGGCAATTGCGGAAAACGGTTTTCCCATTCCGGTTCCTACTCTAGTCATATGACttccaaaaaatgtttagttatGAATTTAAAGTTAGGAAGAACGCGAGGTTCTCCTGCCAATTCTCTATTAGATAAATCTTCGTCGCATAGCAATAGGACTTCCAAACGTACACCGAATAATCctctaaataataatattactaCCAGTCCGAACCATAACGCTTATTTACCGATACTTCCTAAATACACGGAAGCTGCTGCAGCTTTTTTACACACCTCCCTCGCTTCAAACCACACGATGCATTCATTTTATATACCTCCTACAAGTTTGTTGAATAATTCCGGTCCTCCCATAAGTCCCTACTCGATGCCCTCGGTAAACCATATTTTAGAATATCTTCAAGGAGCCTCGCCGCACCGATCTCAGTTTATAGAAGCAGCCGACGACATGACCGTTTGCAATTCAGAAGACGGTGCGAAACAAGAGTCCATAATTTCTTCGCCAAAAAATTCCGACAAAACCGATAACATCGTTAAATCGAACTCTTCCAGCTGTGGCGATTTAATTATGGCTACCGAAAACGAAAATTGTAATATCGCCGAAACGGCAACAAAAGACGAGAATCGTTCGTCGATCGATATTAACAGCAACGGTAGCGACTTAGAGGCCGTAAAGAGGATATTAGAAACCGTAAACGCCACGGTTACCAAACAACTGCTTCAAGCTAACATGCAAAAATATAGCTCAGATAGTATAGGAAACGAAACTAACAGCACTCATTCGTCAGGATTCAAACAGCAAAATGATTTAACTTGTCCCGTAtgtaaacaaacgtttatttcTCAAAATACGTTAGATAATCACGATTGCGATCAGTTCGATTTGAGAAGTGAAGGATTAGCTGCTAAACTCGAGGGAGCCGTGTCCATCAAGGTTGAAGACATGCATTGCGGTAGTTATAGTTGTGGAGAGGACGACATGGATTCCGATAGATTAATGGATAAGAACGATTATTACGAAGTAGACTGTGAATCGGTTACTACCACAGATCAAGTTTCGGAAGATGGTAGAAAAGTTCGCGTTCGTTCCTTAATAGCGGATAAACAGCTGAAAGTCTTAAAGGATCATTATATGATGAATCCGAGACCGAAAAGGGAAGAACTCGTCAAAATCGCTGAAAAAATCGACTTTCCGGTAAGGGTGGTACAAGTTTGGTTTCAAAATACAAGAGCTAGAGATAGACGGGAAGGTCGTTTGATACACGTACCATATAGTCCCATTGGATCTATGCCTCTCCGATTGCCCCCAAATATGGTGCCTTCAAGTTCACAGTCGTTGGGACACAGGGTTGTCTATCCTTTAGTTCCGTCTCCCCAGTACAATATGTTGGAGCAGCCTTTAGATCTATCTACGAAGAAAGAACCATTATCGGCACGTTCTTCGCCATCCGGTTCTCCGCAAAGGTCGCCATCATCGAATCTGCAGTCAGACTCTGGGGAAGAAGTAGTAAATTTAAGTCATAAATCCTCGCGTAGTCCTACACCATTCCATCAATCGTGCCAAAATCACtatcaaaattcaaattcctCTTCCGAGAATCATCGTTCGCCTTCTCCTATGGACTTCAACAATGGAAGTAAGTTAGCTAGAATATTGGCGCAACCGATGCACACCCTACCTTTACCCAATATGGGGCTGGTTCCTATGGATGAATTTATGCGACTGCCTGCGCTCActcaattagtaataaaaaacCGAATATCAAGTTTAAGTCCTACGTCGGAGAAAAGATCTTGGAACGACGATAACGATTCTATAGTTTCTCAAGAGGCCGTTCAAGAAGATCTTAGCAAACGAAGTAAAGTGTCTCAATTTGTAATGAAAGGCCTCGGTAGTCCTATTTTGGGAAACGCGGAAGGTGAAGCGGAGGGTCAATTTATATGCGATCAGTGTGATAAATCGTTTTCGAAACAGAGTTCTCTTGCTCGCCACAAATACGAACATTCAGGCCAGCGTCCTCACAAGTGCGATGAATGTCCCAAAGCATTTAAGCACAAACACCATTTAACAGAACACAAGCGTCTTCACAGTGGCGAAAAACCGTTCCAGTGCAGCAAGTGCCTCAAACGCTTTTCACATTCGGGCTCTTATAGTCAGCACATGAACCACCGTTATTCCTACTGTAAACCTTATAGAGAGTAA
Protein Sequence
MVARSESMFGCYDSYSYRLWSLANVWSTCQFPSLTNGLTKEVEDINSTPEYFIKCPQCQKGCQSFQSLKEHMEASHSDLNSIENGTGIAPNSASPTPSIIGPGGPYGCSQCATSFVTKDQLEKHELLHSPNAQVCCKICNKTFANVYRLQRHMISHDESAVLRKFKCTECEKAFKFKHHLKEHIRIHSGEKPFECGNCGKRFSHSGSYSSHMTSKKCLVMNLKLGRTRGSPANSLLDKSSSHSNRTSKRTPNNPLNNNITTSPNHNAYLPILPKYTEAAAAFLHTSLASNHTMHSFYIPPTSLLNNSGPPISPYSMPSVNHILEYLQGASPHRSQFIEAADDMTVCNSEDGAKQESIISSPKNSDKTDNIVKSNSSSCGDLIMATENENCNIAETATKDENRSSIDINSNGSDLEAVKRILETVNATVTKQLLQANMQKYSSDSIGNETNSTHSSGFKQQNDLTCPVCKQTFISQNTLDNHDCDQFDLRSEGLAAKLEGAVSIKVEDMHCGSYSCGEDDMDSDRLMDKNDYYEVDCESVTTTDQVSEDGRKVRVRSLIADKQLKVLKDHYMMNPRPKREELVKIAEKIDFPVRVVQVWFQNTRARDRREGRLIHVPYSPIGSMPLRLPPNMVPSSSQSLGHRVVYPLVPSPQYNMLEQPLDLSTKKEPLSARSSPSGSPQRSPSSNLQSDSGEEVVNLSHKSSRSPTPFHQSCQNHYQNSNSSSENHRSPSPMDFNNGSKLARILAQPMHTLPLPNMGLVPMDEFMRLPALTQLVIKNRISSLSPTSEKRSWNDDNDSIVSQEAVQEDLSKRSKVSQFVMKGLGSPILGNAEGEAEGQFICDQCDKSFSKQSSLARHKYEHSGQRPHKCDECPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRYSYCKPYRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00789694;
90% Identity
iTF_01294857;
80% Identity
iTF_01294857;