Rgig001974.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- ZFX
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:20476121-20477636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0003 0.028 15.7 1.7 1 23 111 134 111 134 0.98 2 10 3.5e-05 0.0032 18.6 0.3 2 23 197 219 196 219 0.96 3 10 4.8e-05 0.0044 18.2 0.6 1 23 225 247 225 247 0.98 4 10 0.00047 0.044 15.1 2.0 1 23 253 275 253 275 0.96 5 10 5.8e-05 0.0054 17.9 4.5 1 20 281 300 281 304 0.95 6 10 6.5e-05 0.0061 17.7 1.4 1 23 312 334 312 334 0.99 7 10 0.00028 0.026 15.8 3.7 1 23 340 362 340 362 0.97 8 10 0.00045 0.042 15.1 0.7 1 23 368 391 368 391 0.97 9 10 0.00088 0.082 14.2 3.3 1 23 405 427 405 427 0.97 10 10 1.4e-05 0.0013 19.8 1.6 1 23 433 456 433 456 0.98
Sequence Information
- Coding Sequence
- ATGGATCGATCTAAATGCGTTATATGCCTAAAAGAAAGCTTACTTTTGGTTAATGCTTGCGAAACTGATTCGAACAATATTAAATGGAGCTGCAAACTGAGCTCATGCGTCCCAGAAGTAgaATGGAGCGAAGAATACCGAATTTGCACTATGTGCTTAGTAAAATTAGAAGCGGCGTGTGCCTTTCGTAATCTTTGCTTGCAGTCAACAGcactaaaaaaacaacaattaactCTGTGCTTCAAGACGGAGAATGAAGAGTTCAATTATGATAATGTAAAAGTTAACTTATTGGATGGAGTTGATCAAAGTTACaacgaaacatttaaatacgttTGTTTCCATTGTAATGAAGTGCTTCAAAAGaaagtattattaattaggCATATTCGGACCAAACATGGTCCTCGAACGCTTAACagaactgaaaaaaaatataaatgtgataaaaatttttgtttgctcGAAGACGATATCAAAAATCATCAATTAAATCACAACCATATTACAGAAATCGAAATACCTAAGACTGCGCAAGttaaaacaaaatccaaACGGGGacgaaaaaaattggaagGAAAGACAACTGTTTGCCAAGTTTGTGgaatgatttttaatacacAATATTTAGCAAAGAGGCACATGCGCAACGTACATGCAAcagaaaaaaactataaatgtGATATGTGTGAACAAAAATTTGCTAGTCCGGTTTACTTAAGTGCACATAAACGGTACCATTCGGGCGAGAGGCCTCACATTTGTTCCTTCTGTGGCAAAGGATTCATAACGGGTAGTGATTTGTATCATCACGAAAAGATTCATGCAAATAAACGAGCATACAAATGTGATAAGTGTCCGAAAGCATTTAATACGTCATCGGATTtacataaacataaattgtGTGTGCACCAAGACAGGAGCCAGTGGAAATATGTGTGTACATTTTGCAACCGACGATTTCCTTTAAAGACTAATCTAGATGCCCACACAAAAACTCATACTGGTGAGCGTAATTTCGCGTGTCACTTGTGCGAACGTCGTTGCGTAAATAAATCAGTACTCTTACGACATATCAGATCACATTCAAATGTGCGCTTATATAAGTGTACATTATGTAACATGGACTATAAATACCAAAAATCCTTGGACATTCACATGGCTAAAGCACATGGAATTGGAGACGCGAAAATTccagaaaaaattaaaaagttcttTTGTCATGCTTGCCCAAAATCGTATTTCGCCAATAATAAGTTACAAAAGCATATTAGAACTCACACAGGAGAGAGGCCATTTTCGTGCCAGATGTGCCAAAAGAGGTTCATCGATAAGTCCTATGTTAAACAGCACTTACAGACTGCTCACAATGTTACATTCAGTGACACGAGTTTTGActattag
- Protein Sequence
- MDRSKCVICLKESLLLVNACETDSNNIKWSCKLSSCVPEVEWSEEYRICTMCLVKLEAACAFRNLCLQSTALKKQQLTLCFKTENEEFNYDNVKVNLLDGVDQSYNETFKYVCFHCNEVLQKKVLLIRHIRTKHGPRTLNRTEKKYKCDKNFCLLEDDIKNHQLNHNHITEIEIPKTAQVKTKSKRGRKKLEGKTTVCQVCGMIFNTQYLAKRHMRNVHATEKNYKCDMCEQKFASPVYLSAHKRYHSGERPHICSFCGKGFITGSDLYHHEKIHANKRAYKCDKCPKAFNTSSDLHKHKLCVHQDRSQWKYVCTFCNRRFPLKTNLDAHTKTHTGERNFACHLCERRCVNKSVLLRHIRSHSNVRLYKCTLCNMDYKYQKSLDIHMAKAHGIGDAKIPEKIKKFFCHACPKSYFANNKLQKHIRTHTGERPFSCQMCQKRFIDKSYVKQHLQTAHNVTFSDTSFDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -