Rgig007277.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000008.1:907162-908679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.14 13.5 1.8 1 23 131 153 131 153 0.96 2 13 1.9e-05 0.0018 19.4 0.8 1 23 159 181 159 181 0.97 3 13 0.0025 0.23 12.8 0.7 1 23 187 209 187 209 0.98 4 13 0.00088 0.082 14.2 1.0 1 23 215 237 215 237 0.99 5 13 0.025 2.3 9.6 3.0 1 23 243 265 243 265 0.97 6 13 0.0059 0.55 11.6 3.1 1 23 271 293 271 293 0.96 7 13 0.0046 0.43 11.9 6.7 2 23 304 325 303 326 0.94 8 13 0.00066 0.061 14.6 7.7 1 23 331 353 331 353 0.98 9 13 0.00047 0.044 15.0 4.5 1 23 359 382 359 382 0.93 10 13 0.012 1.1 10.7 2.3 2 23 396 417 395 417 0.96 11 13 0.00053 0.049 14.9 1.4 1 23 423 445 423 445 0.97 12 13 0.0005 0.047 15.0 1.8 3 23 453 473 451 473 0.98 13 13 0.0033 0.31 12.4 1.0 1 23 479 501 479 501 0.97
Sequence Information
- Coding Sequence
- ATGTGTAGGGATTGTTATAAGGCTCTAGATATGGCGtacgattttaaaacgagatGCCTAAAAATCGAAGAatccataaataattatttgaggGAACATAAAGACGCGAAGTGTTTGTTAGAGTGGTTCAATTGTATCGTCAAAACTGAACCGAACGATAGGGAATTTAAAATCGAGCAGTTGTTAATCAAACAAGAACAAATTGATTTAGATGACGATAATCATTTTCAGAGAGATCTTTGTGAAGATAAAAGTGGCAACAAAGAAGATTTGGCGGGTCTTTTGAAATACGCAAGtgataatcaatttaaatgcTCGAGGTACGAGTACGGCGCTGCCTACAAGGTATGTCTAGAAAGTCACATTCTCATGCACACTAGTAAGAAACCATTTGAATGTGTGCACTGTGAATATAAAAGTTTGGTCAAATCGAATTTGGAAAGACACATTCGTACACATGTCGATAGTAAACAGTTCAATTGTCCACAGTGCGATTACAAGACGACACAAAAATCAAGTTTAACGGATCACATTCTTTTACACAATTGCCAGAAGCCATTTGAGTGTACGCTTTGCGATTATAAAGCTATTTACAAATCACGTTTGAGAGATCATCTTTTGACACATAGTGGCGAAAAGCCTTTCAAGTGTTCTCAGTGCGATTATAGAGCAAAACAGAAATCGAGATTGGACGTTCATGTTCGCGTGCATAAAGGCAAAGAACCGTTTAAATGTTCGCAGTGTGAGTACAAAACTCAATATAAatcctatttaaaatatcacgAACTCATACACACTAGTAAAATACGTTACGATTGTTTACACTGTGAATATAAAACCATACGAAAATCACATATGGAAAGACATGCTCTTGTGCACGCTcgtttatacataaataatatacaacttCGCTGTTCTCAGTGCGAGTACAAGACCacaaagaaaacaaatttgaCGCATCACCTTCGCTTGCATCACGGCGAGAAACCCTTTCATTGTTCGCTGTGCAAGTACACTGCCTCTCATAAATCACATTTGAAAGATCATATGCGTATACATACCGATGATAAGCCATTTAAGTGTCCCCATTGTGAGTATAAAGCGAAAAGGAAATCCCATTTGAAAAGTCACGTCGCTCTTAAACATTCTCAGTATCTTCATAAAAATACCGATAAAAAGCACCTCCAGTGTTCTCATTGCGAATACAAAACCAATAATGTGACAAGTCTCAAAACACacatttttatacataccGGCGAAAAACCGTTCGAGTGTACAAATTGTGGgtataaaacaaacaatagaGGAACTTTACGGTATCATCTTCTTCAGCACACCAACGAGAAACCGTTCGGGTGTCTTTACTGCAATTACaagacaaaatacaaaaacagcTTAAAGAATCACATTCGCATACACACTGGCGAAAAATTATTCGAGTGCTTAGAATGCGAGTACAAGACCAactacaaacaaaatttgagAAGCCACGTAACTGTGCACAAAAATCTAATATGA
- Protein Sequence
- MCRDCYKALDMAYDFKTRCLKIEESINNYLREHKDAKCLLEWFNCIVKTEPNDREFKIEQLLIKQEQIDLDDDNHFQRDLCEDKSGNKEDLAGLLKYASDNQFKCSRYEYGAAYKVCLESHILMHTSKKPFECVHCEYKSLVKSNLERHIRTHVDSKQFNCPQCDYKTTQKSSLTDHILLHNCQKPFECTLCDYKAIYKSRLRDHLLTHSGEKPFKCSQCDYRAKQKSRLDVHVRVHKGKEPFKCSQCEYKTQYKSYLKYHELIHTSKIRYDCLHCEYKTIRKSHMERHALVHARLYINNIQLRCSQCEYKTTKKTNLTHHLRLHHGEKPFHCSLCKYTASHKSHLKDHMRIHTDDKPFKCPHCEYKAKRKSHLKSHVALKHSQYLHKNTDKKHLQCSHCEYKTNNVTSLKTHIFIHTGEKPFECTNCGYKTNNRGTLRYHLLQHTNEKPFGCLYCNYKTKYKNSLKNHIRIHTGEKLFECLECEYKTNYKQNLRSHVTVHKNLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -