Rgig001172.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:10343080-10347247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.6 5.2e+02 2.2 2.1 1 22 298 319 298 320 0.80 2 13 1.4 1.3e+02 4.2 0.2 1 22 325 348 325 351 0.91 3 13 0.12 11 7.5 3.0 1 23 408 431 408 431 0.95 4 13 0.0032 0.3 12.4 3.3 1 23 437 459 437 459 0.97 5 13 2.2e-05 0.0021 19.2 0.5 1 23 467 490 467 490 0.93 6 13 2.6e-06 0.00024 22.1 4.5 1 23 496 518 496 518 0.98 7 13 0.00027 0.025 15.8 0.9 1 20 524 543 524 546 0.92 8 13 8.9e-06 0.00083 20.5 2.5 1 23 552 574 552 574 0.98 9 13 1.6e-05 0.0015 19.6 0.4 1 23 580 602 580 602 0.98 10 13 5.6e-05 0.0053 17.9 7.6 1 23 608 630 608 630 0.98 11 13 3.3 3e+02 3.0 5.7 2 23 637 658 636 658 0.95 12 13 0.00024 0.022 16.0 1.0 1 23 664 686 664 686 0.98 13 13 1.7e-06 0.00016 22.7 3.5 1 23 692 714 692 714 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCACCAAGGTTATTGTGCGATTCTTATTTTTGTCGATTGTGCGccgaagaaaataaaaatgcttcGTGTTTATTTCCAATCGAAGAAAATGGACAAGATTTAAGTCAACTTGTAAACAAATATCTGCCTTTAAAGATAGAACGAGACGGCAAGTTTCCAATTGTGATATGTCCCGGTTGTAATATCCAACTAGAGGCGACGAAACAATTTTTGGATCTTATCATAGAAGGCCAAAATAAGCTTAGAGATCTATTTAGAATCCAACAAGACACTTTACGGAGGCAAGAGAAACAGAGACAGCAACTCGAAAATGCTCTGAAAAACGTCAATCCGACTTCAACCGTCGAAACTTACACCATCGAAACAGACGAAAGTGGAGAAAAGTTTCTTATTAAAATATTTTCGGAAGGTCCCTTATTCCCACCCGAACATGAACTATCGCTTAAAGCCGAAGGATTAGAGCGTCCTAGACGTAAACGTGGAAGACCCCCAAAACCGCCACCGTTGACAGAAGAGGAAGTACAAACTGCTCAAAATGAAAATGCGAAATCGACTTTGGAAGTTGACGATGAGATGGACGTCGACGCCGATGGACGAcgaagaagaaaaattaaagtaccGTCACGATATCAGGAAGCCGTGCAGGGCAAAGAGTTGGATAGGATATTTAAAGAGGAAGGTGTGCTCGACGAAGATTCATTCTCAGACGAAGAACAAGTTATGGAAATGTCGGATTCTTCGAAAGGCGGTGAAGAAATTATAGGTCACTTGCAAAATAAAGAAGGAGAGGATTTGGGCGAACTCGTGATAGTCAATAGAAACACTAACagactgaaaattaaaaataaagaggGCTCTGTCGCACAGGTGCAAAAGAAGAAAAAGTACGAGTGCGAGATCTGTCGAAGGGAATTTTTACATTATGGGCGATACGAGGTTCACAAGTCATTTCATAAGAACATCAAGTACGAGTGTAGCCAAGCCGATTGTCGATTGCAAACTGATAATAGGGACTCCATGGAGGAACATCAAAAGGAAACTGGACAtagtgaaattattttttttgaagacctcaataattatGGTCAAGTACAACTTCCAAATGCGCTCAAGGACGTGATAACCGACGAGCCAAAGGTAATATCAGAAATACAAACTGAACAGGTTTTCGCCGATCCTTTAAAGACAAACCGTCAACCAGATgccgaaaacaaattttcttgcAACATATGCCTTAAAAACTTCTCCTGCAAGCAGAACTATGAAATCCATTATAAAGCTGTACACGAGAACCAACGTCCATACCGTTGCGATAAATGCGATAAATCATTCCCTTACATAAATAGTTTGAAATGTCACATGCTGCAGCACAGCGACAAAAACGAGAAATTGTACGTCTGCGAAATCTGCAAAAAGGTTTTCAACCATCCCAGTAGTCTTGTTTATCATCGTGAAGCAGAGCACAACAATGGAAGGCGCTTTGTCTGCAGTAAATGCAACAAAAGCTTCAAACACAAACAGTTGCTGCAGCGTCATCAGCTGGTGCATTCAAACGAACGTCCACACTCTTGCAAAAGTTGCGACGCAAGTTTTAAGACCAGAGCCAACTTACTAAACCACATGCCAATACACACTGGCGAAAAGAAATATTACTGCACGCAATGTGACCAATCTTTTGCTCACAAGACGTCCCTTACTCTTCATATTAGATGGCACAGCGGCCAGAAACCCTACGAATGCGATGTGTGCATGAAGACATTTTCCCAAAAAGGAAATCTAGCCGAACACAAGCGGATTCACAcagGCGAAAAACCTTACTGTTGTGATCATTGCGGTCGTAAGTTTACTACGTCGTCGCAGTTTAAGCTGCACGTAAAACGGCATACTGGCGAAAGGCCTTGGAGATGCGAATACTGCTCTAAAGCGTTCTTGCATAAAGACACTTGGAAGTGTCATACGCGAAGACATCGCAACGAAAGACCGTATCAGTGTCAACAATGTTTTAGGGGTTTTACGGAACAATGGGCGCTCAGGAAGCACGAACGTTTACATACTGGCGAGAAGCCTTACGTTTGCGATATTTGTCATAAAGGATTTGCGGACTGCTCAAATCTAACGAAACATAAGAGGATTCATGGCaatattaagttaaataaagGCTTCATTAAGCCGCGCACTGTCACCTCAAAGCCGAAAAACATCAAACTTCTTTCTTCGTCAACGGAAGGAAATGACCAAGTGCTTTACCTAACTTACCAAGACTTAAATTCGAACGATAACCAATTGCAGACATTTGTACACATAATGAATCCTACTGATAATATAGTCGACGAACAGCAATCGGAAACTGCCTATTTGGAGTCAGACGTAATGCCAGAGTCCCTTACCCAATATCAGCAAATTGTGGACGAAGATGTTGGTTTGTTAAGTTTAACGACAGCAGATGGGCaacaaataaaagttgttACCACCGTAGAAGAAGGTCAACAAAACATTCAAGGTCTAATGTCGAACGGAACTCTAGTACCGATCAGTTTAACGATGCAAGACTCCAAGTCCAACGATGGCGTAGACGAGTCTCCTATTGTAGAAGAAACCAGAGATGAGTCTGAACAGTCTGTGGAAaaattagaTCTTAAGATCGATTCTTTAccaaatcaaaatcaaatattgGAAAACAGCATACGGTTTTTAAGCGAAGATGGACAAAAATTGGATAATAACATACAATTCTTAACAGAGGACGGCCAGAACATCTGTTTTGTAACGGCCTATAGTTTGGACGAAAGCATTAATTCTCAGTATTTGGCTATGGCATAA
- Protein Sequence
- MEAPRLLCDSYFCRLCAEENKNASCLFPIEENGQDLSQLVNKYLPLKIERDGKFPIVICPGCNIQLEATKQFLDLIIEGQNKLRDLFRIQQDTLRRQEKQRQQLENALKNVNPTSTVETYTIETDESGEKFLIKIFSEGPLFPPEHELSLKAEGLERPRRKRGRPPKPPPLTEEEVQTAQNENAKSTLEVDDEMDVDADGRRRRKIKVPSRYQEAVQGKELDRIFKEEGVLDEDSFSDEEQVMEMSDSSKGGEEIIGHLQNKEGEDLGELVIVNRNTNRLKIKNKEGSVAQVQKKKKYECEICRREFLHYGRYEVHKSFHKNIKYECSQADCRLQTDNRDSMEEHQKETGHSEIIFFEDLNNYGQVQLPNALKDVITDEPKVISEIQTEQVFADPLKTNRQPDAENKFSCNICLKNFSCKQNYEIHYKAVHENQRPYRCDKCDKSFPYINSLKCHMLQHSDKNEKLYVCEICKKVFNHPSSLVYHREAEHNNGRRFVCSKCNKSFKHKQLLQRHQLVHSNERPHSCKSCDASFKTRANLLNHMPIHTGEKKYYCTQCDQSFAHKTSLTLHIRWHSGQKPYECDVCMKTFSQKGNLAEHKRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWRCEYCSKAFLHKDTWKCHTRRHRNERPYQCQQCFRGFTEQWALRKHERLHTGEKPYVCDICHKGFADCSNLTKHKRIHGNIKLNKGFIKPRTVTSKPKNIKLLSSSTEGNDQVLYLTYQDLNSNDNQLQTFVHIMNPTDNIVDEQQSETAYLESDVMPESLTQYQQIVDEDVGLLSLTTADGQQIKVVTTVEEGQQNIQGLMSNGTLVPISLTMQDSKSNDGVDESPIVEETRDESEQSVEKLDLKIDSLPNQNQILENSIRFLSEDGQKLDNNIQFLTEDGQNICFVTAYSLDESINSQYLAMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -