Rgig020398.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
bgm
Assembly
GCA_036326145.1
Location
JARFJA010000075.1:491161-503600[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.8e-05 0.0016 19.5 0.4 3 23 76 96 74 96 0.97
2 21 0.0044 0.41 12.0 4.4 1 23 102 124 102 124 0.98
3 21 6e-05 0.0056 17.9 5.3 1 23 130 152 130 152 0.98
4 21 0.016 1.5 10.2 1.5 1 21 158 178 158 180 0.95
5 21 0.0018 0.17 13.2 0.6 1 22 192 213 192 215 0.90
6 21 0.0072 0.67 11.3 0.1 3 23 247 268 245 268 0.92
7 21 1.4 1.3e+02 4.1 0.1 1 20 311 330 311 331 0.93
8 21 0.2 19 6.7 0.2 1 23 424 446 424 446 0.96
9 21 0.00068 0.063 14.5 0.1 2 23 462 483 462 483 0.96
10 21 6.2 5.7e+02 2.1 2.7 2 20 492 511 491 515 0.69
11 21 0.0016 0.15 13.4 0.3 1 21 520 540 520 541 0.94
12 21 0.026 2.4 9.6 3.8 1 23 606 629 606 629 0.94
13 21 1.5 1.4e+02 4.0 0.6 2 23 689 711 688 712 0.92
14 21 0.00011 0.01 17.0 4.6 2 23 723 744 722 744 0.97
15 21 0.0033 0.31 12.4 0.4 1 23 753 775 753 775 0.97
16 21 0.47 44 5.6 0.7 2 23 783 804 783 804 0.96
17 21 3.4 3.2e+02 2.9 0.3 1 13 850 862 850 864 0.84
18 21 0.015 1.4 10.3 0.2 2 23 912 933 912 933 0.96
19 21 0.045 4.2 8.8 0.7 1 23 941 963 941 963 0.96
20 21 0.00068 0.064 14.5 0.2 1 23 971 993 971 993 0.97
21 21 0.047 4.4 8.7 2.3 1 23 1000 1022 1000 1022 0.94

Sequence Information

Coding Sequence
ATGGTTATACCACACCTTATTGTGTTGGAAGAAATAAGATGTAGATGTAGATTATTGAAGCAGTTCAgttCTATCGGAACCGAACAGAGTAGTTGGGAAACCAATACACCCGACCAATTATCGCCGACACCTAGTTCTTCTCCCACGCCTAGTTCTAGTATAAGCGATATTGTGGATACAGATATTGCATATACTATAGGTGTTACAGAAACCACCCCATAtggttgtaaaatttgtaataaagcCTTTGCTAGATCATCTTTGTTAAGCAAACATGAACAGatcCATTCGGATCAGCTACAGTACAAGTGTTTATACTGTCCACGTGTATTTAAACATAAACGTTCTCGTGATCGACATGTAAAATTACATACTGGCGATAAGAAGTACAAATGTATTCATTGCCAAACGGCGTTTTCAAGAAGTGATCATCTTAAAATCCACATGAAAACCCACGACAACGCGAAGCCGTTTCGTTGCTTATTATGTAATCGAGGGTATAACACTGCAGCAGCTCTCACTTCTCATCAACAGTGCCatgttaaacaaaatatacaaaatgtgcagggaaattttaaatgccatCAATGTACTGAAATTTTCATTAGATACGATTTACTTcagATACACGCAGCTGCTAAACATACCATTACTACAAATAACAATACTTTACAACAGAATACTCAAAATACCAATAAAGAGTGTAATAATAAACACCTAAATTTTCCGAAATGGATCTGCGTGTATTgcaacaaagaatttagaaatATCGAAGATATACAGAAACACGTTAATGCAGAACACAAAGCTATAGTAAATGGgaattttacagaaaatacttataaaactATCGAAAATACAGTAAATCTATCTACATCCTCTAATAACACTTCAACGATGCCAAATCAACAACCAAATAATTCACCAACATACGCTTGTGATAGTTGTACAATGCAATTTGATTCGATCGAAAAATTAAGGGTTCACGAAAATTGCATTCATTGGAAACCACCACAACCGTTAGTTCCAAATCCAACTACATTTATGAGAGATTATAATTCTTGTCTAGTTCcttctcaaaatattaatttagaaatgttGAACGATTCTCCCAGAACGCAACCGGTTCAATCACAACCAACAGATTTAAGTCGAAAAAGACAAAATTCCGATAAAAGCCCGACAAACTTTAAAAGGAACTGCAACGAAGTTACGCACGCTATTTCAAGTAATACAAATGATCCTGCAAAAAAAGTAGAATGGTCAACTTATATCTGCAACATATGCGGCACtcagttattaaatttttcttccttTCTAATACACATGGATATACACGTATCTATAAATGCGTCATCGGCAAACGTTAATGGTTTAGGTGGTTATTGTCCCTTCTGTGGAGAGTCGTATCAAGATCAAGCAGAATTCAACAACCACATCTTATTGCATGCACTAATTTGCAAGCAAGGTTGGTGCTGTCACGTTTgcaagaaaatttttaacgaaaacttAGAAGAATTGCATAAACATTTGATAGAAAACCACGCGTGTAccatatataaatgtaatatttgtaATCGAATCTTCGACACCAAAACTGCAATGctgATGCATTTATCAAAGGAATATAGTAGCGAATGCCAACATTATCGCTGCAAATTTTGTCCAGAACAAATATTTCATAGCGAACTTACGGCGGAAGTTCACGTATTTCAACACGTTCCTCGATATTATACTCCAACACATAAACCTTCATTTGTGCCATTTCAATTTCCGAACGAATTTAATTCTTGTCCTGAAAGGTtgataaaaacatttcaatGTCCATATTGTCATCACAGCTTTAAAGAGGAGTATCTTCAACGAATGCATGTTATAAAAGAACATGGCGACGTCAGagaggaatCGAATCAAAGAATTCAAGAAGACTGTTCCTTGGAACAACCTTCTTCTTCAGGTCTTCAAAGAGATGTGAAAACAAATTCACCTAATATTTCTTACATAAACAATTTGCCTTCAGCCGAAAATATTTCTAGGTACGATAAAAATGAcgatgatattttaatttgtgatgTTTGCGGTAACACAGATTTCAATAATGATACAGAATTAATTTCCCATAAAAAATTGCATCACGTAAAAGCCAAAGTGGGACCTGTAAGTCTACAGTGCGCTTATTGCAACGAACATTGCAAATCTAGATCGGATCTTGAAAATCACATGAAAACACATCAAATAAATAGTACTAAAGGTAAACATAAGTGTAACATTTGTGATGAAATATTCACGTCGGGTATTACTTTGGCGGAACATAAACTTTCACACTGTAAAATTGTTTCTGGAAACACTTGTACTCAATGTAAAACTGTGCTTGCAGATGAGCAATCATTTTATTCTCATCAATTACAACATAGCGCAATTATGAATAAACCAAATTCACAAATCGTATTACCAGCAAACTGTATTATTTGTTGTCAGACCTTACAAACGGACGTTGAGATAAAATTACACGCTAAATTCCatttacaacatttaattcaaaaagaaTTTCTTTGTAAAATGTGTAATAGGATTTTTGATACTCATACAGGcggtaatataaaaagtttcgatacaagttcagaaaatttacaaatttcgtTATGTAAAGAATGCGTAACGAAATGTGGTTCAAGAAGTAGCTCTAATAGTCCAAGACCGCTACCTTCGAAGCAAGaaaaaactgataaaaatacttgtctAAAATGTCCCCAAAGTTTCGAGAACGAAAATGAAGTTAATAAACACGCAGCTACTCATATCGTAAACGACGGCACAAACTACGAATGTCATCTGTGCAGAAGCATTTTTTCAACGGCCCTGAAGTTGCAATTACATGTTATCGAACATAGCTTTTTTGGCATGGGACAATATCAGTGTTATATTTGTAGTTCTGTTTTTACCACAGCAAATGGCTTGCTTACACACATGATCGAACACGGAACAAATTCGAAACCTTACGAATGTTCAACGTGCcaaatgaaatttttcttcCAAAGTGAACTAGATAATCATAAATACGAACATATATTATCCCGTATCATTGTTCAACCGCCTATTATAAATAGTAACAAAGAATCCGAGGACTGTtctaatgataaaataaaccaagaacctttaaaaaaatgtccaTACTGTAAAGAATTACTTATTACTGCTGGCGGAGAAAATATTCCTCCTGTACTAATTGAACAAACTGAATTACAGGTTCAATTACCATACGTTAATACTGCCATGCTTATTAGAGACAACCGTAATTTTTTGTCAATACTTCTAACATTAAAAACTAGGATTAATTCAGAAGGATATCCATCAAGTGATCTTGCACAAGAAGTTAAAGAGCGGTTAGCTGCTTTAGGGTGTTCTGCCAAAATCATTGAAGATGTATTAAATGCAGGACCGGACAGTCAGCTATTATCTGCAATTCAAGACGGAATTGATAAAGCTAATGAACAAGCTACATCTAACGCACAACGCCTTCAAAAGCTCGCAATTCTACCATCAGATTTTCCGGATTTTTCCATTCCCACGGGAGAATTAGGTAAAACTAATTAA
Protein Sequence
MVIPHLIVLEEIRCRCRLLKQFSSIGTEQSSWETNTPDQLSPTPSSSPTPSSSISDIVDTDIAYTIGVTETTPYGCKICNKAFARSSLLSKHEQIHSDQLQYKCLYCPRVFKHKRSRDRHVKLHTGDKKYKCIHCQTAFSRSDHLKIHMKTHDNAKPFRCLLCNRGYNTAAALTSHQQCHVKQNIQNVQGNFKCHQCTEIFIRYDLLQIHAAAKHTITTNNNTLQQNTQNTNKECNNKHLNFPKWICVYCNKEFRNIEDIQKHVNAEHKAIVNGNFTENTYKTIENTVNLSTSSNNTSTMPNQQPNNSPTYACDSCTMQFDSIEKLRVHENCIHWKPPQPLVPNPTTFMRDYNSCLVPSQNINLEMLNDSPRTQPVQSQPTDLSRKRQNSDKSPTNFKRNCNEVTHAISSNTNDPAKKVEWSTYICNICGTQLLNFSSFLIHMDIHVSINASSANVNGLGGYCPFCGESYQDQAEFNNHILLHALICKQGWCCHVCKKIFNENLEELHKHLIENHACTIYKCNICNRIFDTKTAMLMHLSKEYSSECQHYRCKFCPEQIFHSELTAEVHVFQHVPRYYTPTHKPSFVPFQFPNEFNSCPERLIKTFQCPYCHHSFKEEYLQRMHVIKEHGDVREESNQRIQEDCSLEQPSSSGLQRDVKTNSPNISYINNLPSAENISRYDKNDDDILICDVCGNTDFNNDTELISHKKLHHVKAKVGPVSLQCAYCNEHCKSRSDLENHMKTHQINSTKGKHKCNICDEIFTSGITLAEHKLSHCKIVSGNTCTQCKTVLADEQSFYSHQLQHSAIMNKPNSQIVLPANCIICCQTLQTDVEIKLHAKFHLQHLIQKEFLCKMCNRIFDTHTGGNIKSFDTSSENLQISLCKECVTKCGSRSSSNSPRPLPSKQEKTDKNTCLKCPQSFENENEVNKHAATHIVNDGTNYECHLCRSIFSTALKLQLHVIEHSFFGMGQYQCYICSSVFTTANGLLTHMIEHGTNSKPYECSTCQMKFFFQSELDNHKYEHILSRIIVQPPIINSNKESEDCSNDKINQEPLKKCPYCKELLITAGGENIPPVLIEQTELQVQLPYVNTAMLIRDNRNFLSILLTLKTRINSEGYPSSDLAQEVKERLAALGCSAKIIEDVLNAGPDSQLLSAIQDGIDKANEQATSNAQRLQKLAILPSDFPDFSIPTGELGKTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-