Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: ZCCHC4
Assembly: GCA_036326145.1
Location: JARFJA010000050.1:303248-306956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.023 2.2 9.7 5.0 1 23 431 453 431 453 0.98

2 9 5.6e-06 0.00052 21.1 1.9 2 23 495 516 495 516 0.98

3 9 1.1e-06 9.8e-05 23.4 0.3 1 23 585 607 585 607 0.96

4 9 3.1e-05 0.0029 18.8 0.6 1 23 613 635 613 635 0.96

5 9 2.4e-07 2.3e-05 25.4 2.3 1 23 641 663 641 663 0.99

6 9 2.6e-05 0.0024 19.0 5.2 1 23 669 691 669 691 0.97

7 9 1.2e-06 0.00011 23.2 1.6 1 23 697 719 697 719 0.98

8 9 1.1e-07 1e-05 26.4 0.8 1 23 725 747 725 747 0.99

9 9 0.00037 0.034 15.4 2.8 1 23 753 775 753 775 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.023	2.2	9.7	5.0	1	23	431	453	431	453	0.98
2	9	5.6e-06	0.00052	21.1	1.9	2	23	495	516	495	516	0.98
3	9	1.1e-06	9.8e-05	23.4	0.3	1	23	585	607	585	607	0.96
4	9	3.1e-05	0.0029	18.8	0.6	1	23	613	635	613	635	0.96
5	9	2.4e-07	2.3e-05	25.4	2.3	1	23	641	663	641	663	0.99
6	9	2.6e-05	0.0024	19.0	5.2	1	23	669	691	669	691	0.97
7	9	1.2e-06	0.00011	23.2	1.6	1	23	697	719	697	719	0.98
8	9	1.1e-07	1e-05	26.4	0.8	1	23	725	747	725	747	0.99
9	9	0.00037	0.034	15.4	2.8	1	23	753	775	753	775	0.99

Sequence Information

Coding Sequence: atgTCGCATATCGAAGTAATTATCGAAGACCTAACGAATCACCCCTATTGTCCCCACGGCCCTACAATTCTATTTTCTCGCGTTACCGAGAAAAAACGGCAGAACTTTTTCGCTTGCGCCGCATGTCGCGACCGCAAAGATTGTTCGTTTTACCTGTGCAAGGACGAAAAAGACAAAGTGAGTGATGTTAAACGAAAAAAGTGGGAAGACGATAATGCTAGACTAACAAAGGGAGTTGATCACAGAAAGTCGTTTGTGATATTGAACCAGGTACTGGGGTTGCCGGAGAATCGAAGGTGGTATTGTTGTTCTTGTAGTGTGTTAGTGAGCGATCAGATTAAACATGTTAACCACGAAATAGTCGGTAACATTAGTAATTTTATGTTGACACATCCGTCAGAGTTTTTACCACCTTTAGATAATGCTAAGAAGGAggcacaatttttgttttcgaagaGAGCAGTGAAAACGATAGCAAATATAATGCTGCATAATGAGTTTAAaaATGTGATGTGTGTGGGTACACCAAGGATACACGAATATATATACGAGAAATGTGAAAATGTGAATAGCTTGCTGTTAGATCTAGATTATCGCTATCGTTCTTTTTTTGGACCTTCACAATTTTGTTGGTACaacatgtttaataatttctttttttttcaagattcGAAAAAGACTTTTCGGGAGTTTCTCAAAAATGATATGGGGAACggttttttgttgttgatgGATCCGCCCTTTGGCGGACGTGTCGAGCTTTTAGcagaaacaattaaatatacgaATAGGTTGTACCGGtcggtaaataaattaagcaaAGATTTACCCGTTATGTTGTTTTTCCCATATTTTATGGAACcacaaatacaaaatagttTACCGGAATTTGCGATGCAGAAAGAAGGGTCTCCAGttagaatttttacaaacatcGATCCCagTTTAATTGCTTTACCATTAGACGAAGGATACAAACACTGTAAATATTGTAACAGGTGGGTGGCTCCCGAAAACCTACACTGTCTACAGTGTAATGAGTGTACCTCTAAAAATGGGCGAACATATAGGCACTGCAGTATTTGCAAACGTTGCGTAAAACCGTCGTGGATACATTGCGACACTTGCATTAGATGTGCCCAACCCGACCATAATTGCGGCACGATCGCTTTTAATCAAGCTTGTTTTCATTGCAAAGAGACGGGTCACAAGAAAAGAGAGTGTCTTAAAGTAGACCACGAAAAGTTACAACAAAAGAGAAAGAAAGGGATAAAGAACAAGATGAAAAATCACAAATGCAATATCTGCAACCAACTGTTCTACAAACAAACCGGACTACATATACATTTAAAGCAGCATCTTCCCGAAAAGTTTTCACAATTAATCGCCAATAGCACAAAAACTGTCTACAGCTCGGATAGCGACTGCGAATATGAAATTGTACGGACCGTTAGAAAGTTGTCCGATTTTAAGGGCGGTCGCAAATGCGATGTTTGCAATAAGAATTTCAAAGAAAACGACAGCTTGCGGCGTCACATAAATAAACACGTTAAATTCGATTCCGACAGAAGTGGCGAAGAAACGGTCGATGAATTAATCGACGTGAAACCTTtagattgtttaaataacgatTTAGCGCAAGAATCGTATCCAGAAACTGACGCTGTTGAAACtgtaatgtatttaaatgacGATTTGACACGCAAATCGAATACACAAACTGAAACTATCAAGACTGAAATACCGAAGCattatttatgtatgatttGCGGCAAAGTCTACAACAAGCCTGGAAATTTATCATCTCACATGCGCACCCACAAAGACTATCGTCCTTATTTATGTAGCGTTTGCGgaAAATCGTTTACCTTAAAACGTTACCTGATCGTGCATTCGAGAATTCACACCCAAGAGCGTCCGTTCAAGTGCCAACACTGCAACAAAGGTTTTATACAAAAGAGCAACTTGATTGAACATTTGCGCATCCATACGGGCCTAAAACCGCATAGCTGCACCATGTGTGGAAAGACCTTCACCCATTACAATGGTCTAAAGCAGCATCTATTGACACATAATCCAGTGAAGAAGTTTAACTGCAAAATATGCGGAAAAGCGTTTCGGTTGGCTGGCCATTTTCGCGAACACATACGCACACATTcagGCGACAGACCATACGTGTGCAACGTCTGTAACCGTCGATTCACAAATAGCAGCTCTTTAGTCGTCCACTTGAGAACCCATTCTGGCGAGAGACCGTTTAAGTGCACAGCTTGCAAGAaaggttttattaaaagttacgGACTGAAACAGCACAAAAAGACACATTCCGCTTGTAATATTTCCGAAGATTCGGTTgtgtcaaacaaaaattaa
Protein Sequence: MSHIEVIIEDLTNHPYCPHGPTILFSRVTEKKRQNFFACAACRDRKDCSFYLCKDEKDKVSDVKRKKWEDDNARLTKGVDHRKSFVILNQVLGLPENRRWYCCSCSVLVSDQIKHVNHEIVGNISNFMLTHPSEFLPPLDNAKKEAQFLFSKRAVKTIANIMLHNEFKNVMCVGTPRIHEYIYEKCENVNSLLLDLDYRYRSFFGPSQFCWYNMFNNFFFFQDSKKTFREFLKNDMGNGFLLLMDPPFGGRVELLAETIKYTNRLYRSVNKLSKDLPVMLFFPYFMEPQIQNSLPEFAMQKEGSPVRIFTNIDPSLIALPLDEGYKHCKYCNRWVAPENLHCLQCNECTSKNGRTYRHCSICKRCVKPSWIHCDTCIRCAQPDHNCGTIAFNQACFHCKETGHKKRECLKVDHEKLQQKRKKGIKNKMKNHKCNICNQLFYKQTGLHIHLKQHLPEKFSQLIANSTKTVYSSDSDCEYEIVRTVRKLSDFKGGRKCDVCNKNFKENDSLRRHINKHVKFDSDRSGEETVDELIDVKPLDCLNNDLAQESYPETDAVETVMYLNDDLTRKSNTQTETIKTEIPKHYLCMICGKVYNKPGNLSSHMRTHKDYRPYLCSVCGKSFTLKRYLIVHSRIHTQERPFKCQHCNKGFIQKSNLIEHLRIHTGLKPHSCTMCGKTFTHYNGLKQHLLTHNPVKKFNCKICGKAFRLAGHFREHIRTHSGDRPYVCNVCNRRFTNSSSLVVHLRTHSGERPFKCTACKKGFIKSYGLKQHKKTHSACNISEDSVVSNKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -