Rgig026640.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000093.1:15603628-15614196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.015 1.4 10.3 0.4 2 23 325 347 325 348 0.91 2 19 0.14 13 7.3 0.4 1 20 455 474 455 476 0.95 3 19 7.7 7.2e+02 1.8 0.1 5 21 544 560 543 561 0.92 4 19 7.5e-05 0.007 17.6 1.5 3 23 666 687 666 687 0.98 5 19 2.5 2.4e+02 3.3 0.6 2 23 695 717 694 717 0.92 6 19 0.00065 0.061 14.6 0.0 1 23 731 753 731 753 0.97 7 19 0.00033 0.031 15.5 0.3 2 23 757 778 756 778 0.96 8 19 0.00092 0.086 14.1 0.0 2 23 802 823 801 823 0.96 9 19 0.13 12 7.4 0.1 3 23 868 888 867 888 0.97 10 19 0.00013 0.012 16.9 6.4 1 21 923 943 923 945 0.96 11 19 0.075 7 8.1 1.5 3 23 967 987 965 987 0.98 12 19 0.00026 0.024 15.9 1.2 1 23 1014 1036 1014 1036 0.97 13 19 0.0018 0.17 13.2 0.1 2 23 1047 1069 1046 1069 0.94 14 19 0.00023 0.021 16.0 0.1 1 23 1088 1110 1088 1110 0.95 15 19 0.0065 0.6 11.5 0.1 1 23 1137 1160 1137 1160 0.95 16 19 0.22 21 6.6 0.2 2 23 1171 1192 1170 1192 0.95 17 19 0.00034 0.031 15.5 2.4 1 23 1204 1226 1204 1227 0.94 18 19 4.2e-05 0.0039 18.4 2.0 1 23 1235 1257 1235 1257 0.99 19 19 0.015 1.4 10.3 0.0 1 23 1276 1299 1276 1299 0.93
Sequence Information
- Coding Sequence
- ATGCTTCCATTGAAACGCTTTGGAATGGTGCATCTCTACGTGGTGGGGATGGGTCGTCGATCAGTCATGGCGTTGTTGTTCCATGAGAAGGTGGCTTACGGGAAACTGTGCTTGTCAGAAAAGTTGGGTACGTTGAAGTCCATTTTCGAAGATGCAACAAAAAGTAGAGATGTGGTCGCGAATATACAGGAATTTGTCGGACTAGAAGTAAAAGGGTCCGACAATGTATCGACCATGATTTGTGATCAGTGCCTTACGAAGCTAATTACCTGGCAACATTTTAAGGCGGCCTGTACCGAAAATCAAAAGAAGTTGGGAGAATGGCTGGATGCTTGGAAGGCGAACAGCGACGTGGGCCATGTGATTATCGGTTTGTTGGTGCTACTTTACCCAAGAATGGATTCGCTGGCGAATTCGTGCGACACCGCCGACAACGAAAGTGTACAAAaaCTCACGTCCGTGGAACGATCTAATCGAGCCGACACATCGGCATCCGAAGATGCGGAGAGTTCGTCGGGTAGTTGCAGTAAACAGCCGAAAAGATCTAAAAACGACCAACCGACCGACGTGCAATGTAAAAGAATGTGGAAAAAGAGACGTCTCGTgttgcataaaaaaaaattgcgattaGAAATCGACATTTTAGAGTTGCTTAAGCAGAAAGAGGagCCTATACAAATAAAGGATGAAGTGATGGAAGATGGCGACGAGCATGCACCTAAACAAATTGTACTCGACGATGACGATAACAGCGAGGTTCGAGTGAAGCCCGAACTCGTAGAGGCCAGATGCGACCCGGAACCCATGGACGAAGAGGACATGTACGATTATCCTCCACAGTTGTCACCGCATACAAGTTTTGTTGGAGCTGACGTGACAGCTACCGTGGACGAGACTGCGGACGTCAACGAATTTCTGAACATGGATTCGAACGATTCTAACACATCGTCGAGCACCGACGGGAAAGGGAGAGTTTGCGGAGTTTGCAATAGAGTATTTACTACCGTAGAAAATCGAATAAGACACGAAAACGCCCTACATCATCATAGGAAAAACGTAACCAAGCAGCTTAAATTGAAAGAAACGAGCGGCAACGGAACTTCCGCTAGATTACAAGGAACCGACACGGAAATTcagaaaatcaaatttgcCGCCGGCCTGCACTTGCAACAGCGCTCCCTGAGCTCTGCGCAGTCTGtggaaaatttgtttttgaccaAGGTCGAACTGAGCTACTTGGAAAAATGCAAGACCATTATAACGATGACCGAAACGTTACAGTGCGCCTGTCACGATGAAATATTCGAAGACGTGAAAGAGTTGTACGCTCATTTAAGAAAACAGCGCACCTGGCTCGCCATGTACACCTgctataattgtttaattacgtACGAAGATAGATCGACTTACATGAGGCACACTGCGAACTGTACAAAAGATTTTCTACAGAATCTCAAGCAACTGACGGACACTCACGTAAATCCCGAGATTAAAATGAGACTGTACCAAAATTACAAGTGCATCAAGTGTAAATGTATTTTCGGTTTCCACAATGATTTCTGTAGTCATTTCGACGGCGAGCACATGGAACATATGGAATTAAAGCAGGACGCCCCGCCGTTCGTTTGTATGTGCTCGCAATCGTTTGAGGAACTGGAAGATTACAAACAGCACCTAAACATCACGTGCTTTTTACGTTACTTCTGCGACGTTTGTTACGACACGTTCGAGACCATCGACGATTTCAAATTGCACTGCGAAAGTAAGCACGATAGCGACGAAGGAGTTAATTCGGAAAACGTCGATTATTCCCATAAAAATGTGCAGAGTAATAGTCCCGAGCTGCACGAAGATGTAGACGAGGGGCCCATTACTCGACGAAGAACCGTTAATATGCCTTTTACAAATAACACGTTTGAAGATCCCGATTATATGCCGGATCGCAGAAAAAGCCTTCAAGCtctgtataatataaaatcgtCGAAACCGACCGGATGTCCGGACTGCGGTAGAACGTACTCGTCCTACCACAACATGCTGAGACATTACAAGATGGCTCACGACGTGTCCGGAAAGATTCTGCAATGCTCGTATTGCCTCGACAAGTTTAGGCTCCTTACCGAGCTTAAGGAGCACGAAAATTTGCAGCACAGCGGATTCGACGTCAACAAGCCCGGCAATCAACTTAAGTACGCATGTCCGGAATGTGGGATGCTGTTTAAGAGCGTGGACAATTGGAACGATCATTTGGATACTCATCCTAAAAAGGTGTGCACCGAATGCGACAAAGAGTTTATTTCGCAGAACGACCTCGACCAACATCGAAGCGTGCATCTGAATATTAAAGTTTACAGAGACTCGGagactaaaaattataagagcGAGATGGTCGGCTCGAGTTTGGTTTGCGAGGTCTGCGACGAAATATTCGAATCGAACGGCGGTCTGCAGGAGCACAAGCTGACGCATAGTTTGAAGGATTTGAGCAAGAAGTACAGTTGCATTCCGTGCAATAAACATTACGTGAGTTACGGCGGAATTTGGGATCACAATAAGAAGCATCACGGTGGCAAGCAGGTGACGAACGAGTTCCCTCGAGATTGCGAGATATGTAATAAATCGTTGTTGTCGCGCGGCGCTTGGGTGAATCATCAGCGCATGCACGCCCGCATGGCCGAATTAAACAATGCGAACGACGAGGACGGCCGCTCGGCCAAAATGAAAATCATCAAAACCGATAAGTACAGCGACGATTCGGAGTCTTACTATACGTGCAATAGGTGTTTTAAGGTGTTCTCGAGCAAATACAATCTCAGGAATCACATGAAGTGTCACGGAATAAATTTGAATGCGAACAGGAGCAGTCTGAAGACCGGCaaagttattaaaacattttggtgTAACATTTGCCATCAAGCTTGCCCCGGCTACGCTGAATTGCAGCAGCACAAACGGGAACACTTGGCCGAGAAAACAAAGTCGGCGAATAAGGAAGAGGAGGAGGAGGAAGAAGTCGAAGAAAAGAAACCGCCGGTCACGTTCGATTGCGACTTGTGCACGGCGACGTTCTCGACCAGTTTCGCCCTTAAACGACATTACGAGAAACATCCCGATTTAATACCGAAACAGTTTTCGGTTTACTGCAAGTACTGCAAAATACCATTCCCGGACGTGCAACAGCTCAATACGCACATGGAAAACGAGCACGACCAGGTGATAAACACGATGAACAAGAATAAGTCCAAGTCGCCGACAAAGAAATTCGTCTGCAAATTGTGCAAGAAAGCTTTCAATAACGCGGGCGCCCTCTCTTCGCATCAGGGCTGGCATAAACGGGGAAAGTTCTACAAAAACGGAAAAGTCTATGGGAAAGTGtttaaaaataccgaaaaagTTATAGTGCCGAAATTCAGATGTGGCACTTGTTCGATGGTGTTCGTGAACGATACGGCTCTGCAAATACACATTTTGGAGACCCATAGGAATATTAACGCGACAGTTTTGAATTTGAACTGCAGCAGCTGCAAAATAGGTTTCGAGTCGAAGGCGGCCTACGATATTCACATGCAGTTCCATCAACAATTGGAAGGTCGGAGGTCGTCGAAGCCTCATCCCTGCAATTTCTGTTCGGCCGGTTTTAGCCGAAGCGATACCCTGAATGCTCATATCAAGCAACACCACAAGGAACATTATAATGAATTGTTTAAGTGTAACCAGTGCGATCGCACGTTCGATAAGCAGAACGCCTTAACGATCCATTCAAAAACCCACGACCGGCAGAGAATGGGCGACGATAAACCTAAACCGATCCACaataagaatatttatttttgttcgatcTGCGATCTTGGTTTTGTTATAGCAAAGGATCTGCGGAACCACGTTGTCAGTGCTCATCCGTTTTAA
- Protein Sequence
- MLPLKRFGMVHLYVVGMGRRSVMALLFHEKVAYGKLCLSEKLGTLKSIFEDATKSRDVVANIQEFVGLEVKGSDNVSTMICDQCLTKLITWQHFKAACTENQKKLGEWLDAWKANSDVGHVIIGLLVLLYPRMDSLANSCDTADNESVQKLTSVERSNRADTSASEDAESSSGSCSKQPKRSKNDQPTDVQCKRMWKKRRLVLHKKKLRLEIDILELLKQKEEPIQIKDEVMEDGDEHAPKQIVLDDDDNSEVRVKPELVEARCDPEPMDEEDMYDYPPQLSPHTSFVGADVTATVDETADVNEFLNMDSNDSNTSSSTDGKGRVCGVCNRVFTTVENRIRHENALHHHRKNVTKQLKLKETSGNGTSARLQGTDTEIQKIKFAAGLHLQQRSLSSAQSVENLFLTKVELSYLEKCKTIITMTETLQCACHDEIFEDVKELYAHLRKQRTWLAMYTCYNCLITYEDRSTYMRHTANCTKDFLQNLKQLTDTHVNPEIKMRLYQNYKCIKCKCIFGFHNDFCSHFDGEHMEHMELKQDAPPFVCMCSQSFEELEDYKQHLNITCFLRYFCDVCYDTFETIDDFKLHCESKHDSDEGVNSENVDYSHKNVQSNSPELHEDVDEGPITRRRTVNMPFTNNTFEDPDYMPDRRKSLQALYNIKSSKPTGCPDCGRTYSSYHNMLRHYKMAHDVSGKILQCSYCLDKFRLLTELKEHENLQHSGFDVNKPGNQLKYACPECGMLFKSVDNWNDHLDTHPKKVCTECDKEFISQNDLDQHRSVHLNIKVYRDSETKNYKSEMVGSSLVCEVCDEIFESNGGLQEHKLTHSLKDLSKKYSCIPCNKHYVSYGGIWDHNKKHHGGKQVTNEFPRDCEICNKSLLSRGAWVNHQRMHARMAELNNANDEDGRSAKMKIIKTDKYSDDSESYYTCNRCFKVFSSKYNLRNHMKCHGINLNANRSSLKTGKVIKTFWCNICHQACPGYAELQQHKREHLAEKTKSANKEEEEEEEVEEKKPPVTFDCDLCTATFSTSFALKRHYEKHPDLIPKQFSVYCKYCKIPFPDVQQLNTHMENEHDQVINTMNKNKSKSPTKKFVCKLCKKAFNNAGALSSHQGWHKRGKFYKNGKVYGKVFKNTEKVIVPKFRCGTCSMVFVNDTALQIHILETHRNINATVLNLNCSSCKIGFESKAAYDIHMQFHQQLEGRRSSKPHPCNFCSAGFSRSDTLNAHIKQHHKEHYNELFKCNQCDRTFDKQNALTIHSKTHDRQRMGDDKPKPIHNKNIYFCSICDLGFVIAKDLRNHVVSAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -