Rgig009670.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000021.1:1627393-1629234[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-05 0.0014 19.8 6.2 1 23 226 248 226 248 0.99
2 12 1.8e-06 0.00016 22.7 1.3 1 23 254 276 254 276 0.99
3 12 0.0005 0.047 15.0 0.9 1 23 282 304 282 304 0.99
4 12 0.00011 0.01 17.1 0.5 1 23 310 332 310 332 0.98
5 12 0.0014 0.13 13.6 3.7 1 23 338 360 338 360 0.99
6 12 0.00011 0.01 17.0 0.2 2 23 367 388 366 388 0.97
7 12 7.9e-06 0.00074 20.6 6.3 1 23 394 416 394 416 0.99
8 12 5.5e-06 0.00052 21.1 1.9 1 23 422 444 422 444 0.99
9 12 7.6e-05 0.0071 17.5 5.9 1 23 450 472 450 472 0.99
10 12 1.4e-05 0.0013 19.9 2.3 1 23 478 500 478 500 0.99
11 12 0.00019 0.017 16.3 3.8 1 23 506 528 506 528 0.99
12 12 0.036 3.3 9.1 5.9 1 23 534 556 534 556 0.97

Sequence Information

Coding Sequence
ATGCAGTCGTTATGCAGAACCTGCTTGCGACAAACATCCGATGGCATGTCCATTCTTCTAGACTTGGAGCATCGTTATAAATACCGGTTAATGTCCTGTGTGCCGGAAATGGATTTACGAATATTTCCCGATGCGAAGCTGTGCAGTGATTGCATTGCTGCCCTCGATATAacctacaaatttaaaattaaatgtcgtGGAGTGGAAGATCAGATTAATAAGCAACAATTGAATGTAATGCAACGTTTAATGGTTAAACAAGAAATCTATGCTGTTTGTAGAATATGTCTTGTTGATATTATAGATAGTAGTTTTTCGTTTCCCAAGAGTAAATTGATGCTTTGTGTTCCCGAAATGGATTTACAAGCTATATATGATACTAACCTCTGTAAAGATTGTCGAATGACGCTCGATACGATCTACATCTTTAAAACCAATTGCCTAAacgtagaaaaaaatattaaagagtATCTAAAATCGCACAATACGGTAGATTTTGAGACCTTGTCCGTGTGGTGCAATGCTTCGATCAAAAATGAAGTAAATCACATGGaggattttacaattaaaaaagaagaagTCGATTTGATGAACGAGGACGAAATAACAGAGGACGTCAAATATTCGAAATACGAATGCAGTACCTCGTCAAAAAGTCATATCGatagaaaactatttaaatgtttacagtGCGACCACAGTTCCACACGAAAATCTCACTTGATAAAACATATTCGCACGCACACGGGCgagaaaccatttaaatgttcctATTGCGAATATGGTTCTGCAGACAAATCTAGTTTAAAACGACATATTCGTACGCACACCGGCGAGAAACCGTTCAAATGTTTGCAGTGCGAATACAAGGCTGCCCAGAAATCCACCTTAAAGCAGCACATCGAAACGCATAGCGGCGAAGGACCGTTTAAGTGCCCGCAGTGCTCGTACAGTGCTGCTCAAAAAACTCAACTACAAATTCACATTTACACGCACACGGgcaaaaaaccatttaaatgtttgcaGTGCGAATATTGTGCTGCCAATAAAAACAGATTAAAAAGACATATACGCACGCATACGGGCGATAAACCGTTAAAATGCTCGCAATGCGGTTATGGCGCTGCAGAAAAATCACAATTAGAACGACACGTTCGCACGCACACCGGCGAAAAGCCGTTCAAGTGTTCGCATTGTCATTATAGTGCCGTACAAAAATCGCAGTTAAAACGACATATTCGCACTCACACCGGCGAAAGATTATTCAAGTGTCCGCGGTGCGAATACAGCGCCACGCAAAATTCTCATTTGAAAGTACACATTCGCATGCAcactggtgaaaaaccattcaAATGTTTATACTGCGAGTACACCACTGCGTACAAGtcgcacttgaagaaacacacTCGCACACACACCGGCGAAAAACCGTTCAAATGTCCGTACTGTGAGTACAGTGCCATTCAGAAaactcatttaaaaatacacattcgCAAACATACCGGCGAACAACCGTTCAAGTGTTCGCACTGTGAGTTCGGCACTTCCAATAAAACACAATTAAAAGAACACGTTCGCACGCACACTGGCGAAAAACCATTCAAATGTTTACGATGCGAATACAGCACTGCATATAGATCTCACTTTAGAAAACACATTCACGCGCACATCGACGAAAAACCGTACAAATGTTCGTGTTGCAATTGTAGTGCTGCTCAAGACAAACCGAAACCTGTTTAA
Protein Sequence
MQSLCRTCLRQTSDGMSILLDLEHRYKYRLMSCVPEMDLRIFPDAKLCSDCIAALDITYKFKIKCRGVEDQINKQQLNVMQRLMVKQEIYAVCRICLVDIIDSSFSFPKSKLMLCVPEMDLQAIYDTNLCKDCRMTLDTIYIFKTNCLNVEKNIKEYLKSHNTVDFETLSVWCNASIKNEVNHMEDFTIKKEEVDLMNEDEITEDVKYSKYECSTSSKSHIDRKLFKCLQCDHSSTRKSHLIKHIRTHTGEKPFKCSYCEYGSADKSSLKRHIRTHTGEKPFKCLQCEYKAAQKSTLKQHIETHSGEGPFKCPQCSYSAAQKTQLQIHIYTHTGKKPFKCLQCEYCAANKNRLKRHIRTHTGDKPLKCSQCGYGAAEKSQLERHVRTHTGEKPFKCSHCHYSAVQKSQLKRHIRTHTGERLFKCPRCEYSATQNSHLKVHIRMHTGEKPFKCLYCEYTTAYKSHLKKHTRTHTGEKPFKCPYCEYSAIQKTHLKIHIRKHTGEQPFKCSHCEFGTSNKTQLKEHVRTHTGEKPFKCLRCEYSTAYRSHFRKHIHAHIDEKPYKCSCCNCSAAQDKPKPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-