Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: -
Assembly: GCA_036326145.1
Location: JARFJA010000056.1:1114890-1117079[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0032 0.3 12.4 1.5 2 23 264 285 263 285 0.97

2 14 1.7e-06 0.00016 22.8 2.9 2 23 294 315 293 315 0.98

3 14 0.00083 0.077 14.3 2.4 1 23 321 343 321 343 0.99

4 14 4.2e-06 0.00039 21.5 0.9 1 23 349 371 349 371 0.99

5 14 1.5e-05 0.0014 19.7 2.2 1 23 377 399 377 399 0.99

6 14 3.6e-06 0.00034 21.7 0.3 1 23 405 427 405 427 0.99

7 14 0.0081 0.75 11.2 1.0 1 23 433 455 433 455 0.97

8 14 0.017 1.6 10.1 11.3 1 23 461 483 461 483 0.98

9 14 0.00054 0.05 14.9 3.3 1 23 489 511 489 511 0.98

10 14 0.0025 0.23 12.8 3.0 1 23 517 539 517 539 0.98

11 14 3e-05 0.0028 18.8 5.3 1 23 545 567 545 567 0.98

12 14 1.1e-05 0.00098 20.2 3.2 1 23 573 595 573 595 0.99

13 14 0.00011 0.01 17.1 2.7 1 23 601 623 601 623 0.99

14 14 0.0043 0.4 12.0 1.7 1 22 629 650 629 650 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0032	0.3	12.4	1.5	2	23	264	285	263	285	0.97
2	14	1.7e-06	0.00016	22.8	2.9	2	23	294	315	293	315	0.98
3	14	0.00083	0.077	14.3	2.4	1	23	321	343	321	343	0.99
4	14	4.2e-06	0.00039	21.5	0.9	1	23	349	371	349	371	0.99
5	14	1.5e-05	0.0014	19.7	2.2	1	23	377	399	377	399	0.99
6	14	3.6e-06	0.00034	21.7	0.3	1	23	405	427	405	427	0.99
7	14	0.0081	0.75	11.2	1.0	1	23	433	455	433	455	0.97
8	14	0.017	1.6	10.1	11.3	1	23	461	483	461	483	0.98
9	14	0.00054	0.05	14.9	3.3	1	23	489	511	489	511	0.98
10	14	0.0025	0.23	12.8	3.0	1	23	517	539	517	539	0.98
11	14	3e-05	0.0028	18.8	5.3	1	23	545	567	545	567	0.98
12	14	1.1e-05	0.00098	20.2	3.2	1	23	573	595	573	595	0.99
13	14	0.00011	0.01	17.1	2.7	1	23	601	623	601	623	0.99
14	14	0.0043	0.4	12.0	1.7	1	22	629	650	629	650	0.96

Sequence Information

Coding Sequence: ATGGAGTCTTTTTGCAGAACCTGCCTCCAACAAATTTTCGATAACACGTCGGCTTCTAcggatttcaaaaattcgtcTAATAAACACCAGCTGATGTTTTGCATACCAGAAATGGATCTACGAGCATTGCTCGACGAAACGTTGTGCAAGGATTGTTTTGCCACCCTCCGTGtaatatatgaatttaaaattaaatgtcgagAGGTCAATAAGCAATATTTAAATGCGACCATACAATTAATgattaaacaagaaattaatttggaCAACGTCCGTGCAATTTGTAGGACGTGCCTTATGGACGTCGAAGAAGACAGTAGTTTTACTTTTTCGACACGAGAACTGTTCTATAAATGTAGATTGATGCTTTGCGTACCAGAAATGGATTTACAAACTACGCCCGATACGATCTTGTGCAAGAATTGTCATGCGGTGCTCGATGCGTTTTAtgagtttaaaataaaatgtttagacgtagaaaaaaatatgaaagagTATCAGAAATTACACGGCATTGTAGATATTCGAGACTTGTCCGTCTGGATGaattacatagaaaattttacgatCAAACAAGAAGTTGGTCTGGTAAAGCAAGAGGAAGTAGTGGACAATTTGGACGAACCGATTGCAAACGTCAAATCTCTTCCTATAAAAAGTGACGGGCAAACATTCTGCAAACGTACCGGTAAAGCAAAATCTGTATGTGAAAACGGTACGTGCACCAGTTTGAAGCATCTTTCTAAACGATCGAAAaagaactttaaaaattcaaaGGCGAAAAAACTAAAGTGTCTACAGTGCGACTTTAGAGCCTCGTACAAATCCGATTTAGAAAGGCACAATCGTAAACATACCGGGAAAAAACTATGGCTGTCTAAGTGTCCGTTATGCGAATACAGTACTGCACAGAGGTCGCACTTGAAACGACATATGCGAACGCATACCGGCGAAAGACCATTTCAGTGTTCACAGTGCGAATACAAGGCTGCTCTTAAatcgcatttaaaacaacacatTCAGACGCACACCGGCGAGAAACCGTATAAGTGCTCGCAATGCGAATACAAGGCTGCTCGAAAATCTGATTTAGAACGACACATTCGTACGCACACTGGCGAGAAACCATTTAGATGTTTACACTGTTGGTACAGTGCCCCGCGAAAAgccaatttaaaacaacatatgCGCACGCACACCGGCGAGAAGCCGTTTAAGTGTTCCGAGTGCGAGTACAGCGCCGCTCGAAAAGCCGATTTAGAACGACACATTCGTACACATACCGGCGAGAAACCGTTTAAGTGTTTGCAGTGCGAGTATAGTGCCGCACAGAAATCTTGTTTAAAAGTGCACGCCCTTGTCCATACCGGTgagaaaccatttaagtgtttgCACTGCGAACACAGTACTACGCACAAATcgtatttaaaacaacacatTTGCATGCACACCGGCGAGAAACCGTACAAATGTTTATATTGCAGGTATAGTACTGtgaaaaaatctaatttagaAAACCACACTTTCACGCATACCGGCGATAAACCATTCAAGTGTTTACATTGTCAGTATGGGGCTGCACGAAAACCTGATTTAGAACGACATATGCACAAACACGTCGCCGAGAAATTGTTTAAGTGTTCACAGTGTGAATACAGTACCACACGAAATTCTAATTTGAAACATCACATGTACTCGCACATTGGCCAAAAGCCGTACAAGTGTTCACAGTGCGAATATATTACTGCAAGCAAATCGCATTTGAAACAACACATTCGCACGCACACCGGCGAGAAGCCGTATAAGTGTTTACAGTGCGAGTATAGTACTTCGCGAagattcgatttaaaaaaacatttactgACGCACGTTGGTAAGACGCCGTTTAAGTGTTCGGAATGCGAGTACACGGCAGCTCGAAAATTTGATTTCGAAAGACATATTTGCACAAATACCGGTGGTGAGAAACCGTTTACTACAGAAAATATTCATTTGAAACATTATTCAGACATGCAGTGCTAa
Protein Sequence: MESFCRTCLQQIFDNTSASTDFKNSSNKHQLMFCIPEMDLRALLDETLCKDCFATLRVIYEFKIKCREVNKQYLNATIQLMIKQEINLDNVRAICRTCLMDVEEDSSFTFSTRELFYKCRLMLCVPEMDLQTTPDTILCKNCHAVLDAFYEFKIKCLDVEKNMKEYQKLHGIVDIRDLSVWMNYIENFTIKQEVGLVKQEEVVDNLDEPIANVKSLPIKSDGQTFCKRTGKAKSVCENGTCTSLKHLSKRSKKNFKNSKAKKLKCLQCDFRASYKSDLERHNRKHTGKKLWLSKCPLCEYSTAQRSHLKRHMRTHTGERPFQCSQCEYKAALKSHLKQHIQTHTGEKPYKCSQCEYKAARKSDLERHIRTHTGEKPFRCLHCWYSAPRKANLKQHMRTHTGEKPFKCSECEYSAARKADLERHIRTHTGEKPFKCLQCEYSAAQKSCLKVHALVHTGEKPFKCLHCEHSTTHKSYLKQHICMHTGEKPYKCLYCRYSTVKKSNLENHTFTHTGDKPFKCLHCQYGAARKPDLERHMHKHVAEKLFKCSQCEYSTTRNSNLKHHMYSHIGQKPYKCSQCEYITASKSHLKQHIRTHTGEKPYKCLQCEYSTSRRFDLKKHLLTHVGKTPFKCSECEYTAARKFDFERHICTNTGGEKPFTTENIHLKHYSDMQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -