Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: Rreb1
Assembly: GCA_036326145.1
Location: JARFJA010000019.1:4761218-4767521[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.035 3.3 9.1 4.6 1 23 15 37 15 37 0.96

2 22 0.016 1.5 10.2 0.7 2 23 44 66 43 66 0.95

3 22 7.5e-05 0.007 17.6 7.5 1 23 71 93 71 93 0.98

4 22 4.4e-05 0.0041 18.3 2.9 1 23 102 124 102 124 0.99

5 22 5.7e-07 5.4e-05 24.2 0.5 1 23 129 151 129 151 0.98

6 22 2.5e-05 0.0023 19.1 2.3 1 23 157 179 157 179 0.98

7 22 1.9e-07 1.8e-05 25.7 1.6 1 23 185 207 185 207 0.98

8 22 4.7e-06 0.00044 21.3 0.9 1 23 213 235 213 235 0.98

9 22 0.0033 0.31 12.4 0.5 1 21 259 279 259 280 0.94

10 22 1.7 1.6e+02 3.9 2.7 1 23 286 308 286 308 0.95

11 22 0.23 21 6.6 1.7 1 21 474 494 474 495 0.95

12 22 0.089 8.3 7.9 2.7 3 23 503 524 502 524 0.95

13 22 0.022 2 9.8 1.5 3 23 530 550 529 550 0.97

14 22 0.0086 0.8 11.1 4.1 1 23 556 579 556 579 0.96

15 22 9.9e-05 0.0093 17.2 5.0 1 23 584 606 584 606 0.98

16 22 0.042 3.9 8.9 1.4 1 23 718 740 718 740 0.97

17 22 0.00046 0.043 15.1 1.4 2 23 755 776 754 776 0.97

18 22 0.0007 0.065 14.5 1.2 1 23 817 839 817 839 0.99

19 22 0.22 20 6.7 0.2 1 21 976 996 976 997 0.94

20 22 0.0053 0.5 11.7 0.5 1 23 1022 1044 1022 1044 0.99

21 22 0.037 3.4 9.1 1.2 3 21 1376 1394 1374 1395 0.94

22 22 0.22 21 6.6 2.7 3 23 1402 1423 1401 1423 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.035	3.3	9.1	4.6	1	23	15	37	15	37	0.96
2	22	0.016	1.5	10.2	0.7	2	23	44	66	43	66	0.95
3	22	7.5e-05	0.007	17.6	7.5	1	23	71	93	71	93	0.98
4	22	4.4e-05	0.0041	18.3	2.9	1	23	102	124	102	124	0.99
5	22	5.7e-07	5.4e-05	24.2	0.5	1	23	129	151	129	151	0.98
6	22	2.5e-05	0.0023	19.1	2.3	1	23	157	179	157	179	0.98
7	22	1.9e-07	1.8e-05	25.7	1.6	1	23	185	207	185	207	0.98
8	22	4.7e-06	0.00044	21.3	0.9	1	23	213	235	213	235	0.98
9	22	0.0033	0.31	12.4	0.5	1	21	259	279	259	280	0.94
10	22	1.7	1.6e+02	3.9	2.7	1	23	286	308	286	308	0.95
11	22	0.23	21	6.6	1.7	1	21	474	494	474	495	0.95
12	22	0.089	8.3	7.9	2.7	3	23	503	524	502	524	0.95
13	22	0.022	2	9.8	1.5	3	23	530	550	529	550	0.97
14	22	0.0086	0.8	11.1	4.1	1	23	556	579	556	579	0.96
15	22	9.9e-05	0.0093	17.2	5.0	1	23	584	606	584	606	0.98
16	22	0.042	3.9	8.9	1.4	1	23	718	740	718	740	0.97
17	22	0.00046	0.043	15.1	1.4	2	23	755	776	754	776	0.97
18	22	0.0007	0.065	14.5	1.2	1	23	817	839	817	839	0.99
19	22	0.22	20	6.7	0.2	1	21	976	996	976	997	0.94
20	22	0.0053	0.5	11.7	0.5	1	23	1022	1044	1022	1044	0.99
21	22	0.037	3.4	9.1	1.2	3	21	1376	1394	1374	1395	0.94
22	22	0.22	21	6.6	2.7	3	23	1402	1423	1401	1423	0.93

Sequence Information

Coding Sequence: ATGGCCGTTAAAGATGATTCGATAAAAACGCCCGCGAAAACTTTCAAGTGCGTTTTGTGCGAAAAGgagttttgtaaaaaacaGTCGCTCAAATACCATTCGGCCCGGCACGTGCAAGACTACAAAGTGAAATGCGACCAGTGCGAAAAGGGCTTTTACACGATGCTGGACTTTAAAAGGCACTACGCCGTTAAACACAAAGGATTGCGGTTCGTTTGCAATCATTGCAAAAAAACGTTCGTCGACGAGTATTGTTTTAAACGACACATTAAGACGCACGACACCAATTACGTCGAAAGCGAGTACAAGTGTTGCGAATGCAACACCGTTTACAAAACGAGGGGCGGTTTGAACGTGCACATGAAGAAGCACAAGAACATAACCTATATTTGCGACATTTGCGGAAAATCGGTGTCTTCCAAGTCGAGCCTAAATCACCACATCATGGTGCACACTGGCGAAAAACCGTTCGTGTGCGAGACTTGCGGGAAGTgctttaacaaaaaaatgctGCTCAGGATACACGAGCGGATACACACGAAAATTAAACCTTATAGTTGCGAGATATGTAACAAGAGTTTCAGTCAGCGTAGCACGCTCACTGTCCACTTACGTTACCATACCGGCCATCGACCCTACAAATGCGAAATTTGTCAGAAAAGGTTCGTCACCAAAACGTTACTGAAGGTGCATGCGAAGGTGCACGGAACAGCGTTGGTCGATATATTCGTCCCTTTGTCAGAAACCGTGCAAGAAGTTGTGCACCAAACGATCTACGAATGCGAAGTGTGCAGCCAGatattttcgacgaaaaaaGAGTATCTCGCGCACCACATGAACGAGTTTGGCGAAACATTTTGTTGTTGTCGATGCGACGCCATTTTCGCGACCACGACGGAATTATACGGTCATTACGAGATACACAAGGACAATAATATCGTGATCGAAACGGAAGAGAATCCATTCGAGTATACGGAGAACGTCGAAGCGGTCATGAATATCCCGAGCGAGCCCACAAACGAAGCGGAGGAATTGTTGTACATTCTTGACGGTTCTCAGTGCATCAACGAAGTAGTCATCGAGGAGGAGGCCGAAACGCAAGAGTTGGAAACGGAGAGTTCTCCCGTCAAGCCGGAAAACTATACGATCGTCCAGGTCGAGCATGGCTACATGTTGCCTAGCGTTTTCAAAGGGCAGCTGGGCACCAAACGGCGGTACAAGAAAAAGACTTCGGAATCCATGCCGGAATATTTAGGCGACGAAGACAGTAGCACCGAAATGACTCAGTACGAAGCCACTTCCAGTAAGGGCAGCGCGTCTTCTTCCAAGACGCGACCGAAGCGCCGACACGAGCTTCCGGATTTTTCGGCGACCAATTATTCCATTATGAATCCCAACGAGGAGGTGGATATCGTTCATTATAAGTGTTTGCGTTGCGAACAATTGTTCATCAATAAGTTCACCTTTTTCAAGCACATCGAGAAAGGGAAATGTTATATTAACAGTTGCGACGTGTGCTGTACTTCGTTTACGAGAAACAGCGACTTTTATAATCATTATCTATCGGAGCACACGGACAGGgctatttgtaatttttgttttagaacgTTTATGTACGAGAAGAACGTTAAGGAGCACATGCTGAGACATCTAGATCAGTTTCGGCACCGATGCGAGGAATGCAATAAAGGATTTTATACCGTCAGAGAGTATAGAAACCATTATAAAAATCGACACATGGGTATACGACACAAATGTCATTCTTGCGGACGTTCTTTCGCCgacgaatattattttaagcgACATCTCGCGACACACGAGAAAGCGTTGACGGCGAAACTACAATTATCCgtgtataaATCACTCTACAAAACACATACTAAACTGCGAACAAAACGAGTTACCAATGTAAATACAAGGCAAACTAAAAGGCAGTCTAACAATCTCGTTGCAATGCTCAAGAAAAAATACAAGCTCAAGGACTGCTCAGTCGTGCTGACTGACTTCGCGAAGCTTCCACCTCCAAACAAAAAACAGTCCGAGGTTTCGAAATCGAAAATCGTCCAAAAATCGCCGCCGAAAACGAAAACGGGCAGCAGCTCGTCCTTGCCGACCCTAAATCTCTTCGGCAAAAAATTCGTAAAGCTGCTCTACAAGTGCGCGCAGTGCAAGGAGGCATTCGACGATTCCGTCAAACTAAAATGTCACGTGATGATGCACAAAATGAAGCAGGACGAGCGAAAGAAAAAGTCCGCGAGCACGTCCTGCTACATGTGTCTGAAGAAATTTCCGGATCGCAACGCATTGAAGACTCACCTCCGCACGCACACGCGCAAGCGTCCTATGTCGGCGAAGAACTCTAACGCGAACGGCAACCAAATCGCTCCCCAAAGTAGTCACGTTAGAGATACCGCTTCGAAACCTTACGGAAACAATTCCGAATTGAGATATCGATGTAATATATGCATGAAGAAATTCGCCGATCTCGACCAGATGCGGGAGCATAAGAGAATGCACGGAGTATCGTCTGACGTGACATCGGAGAACGTCACGGACACCGTCGAATCGGCCGACACTACAAGTACTACACCGGTACTACAGACAAACGACGAAATTGTCACTCTAGTGACCGACAATGAACCTACGACGCCAGccaaagaaaagaaaattatttcagaGACTCCAAAGCACACCGAAATCGGCGTTCCGGAATTGCTATCGCCGACATTTAAATGCTGCGATCAAATATTTCTCGATCGCAAATGTTTAATGAAACACGTACATGGAATGAAGGCAACTCCGAACAACACCTGCCTGTCCAATCCCATATACGTTTGCAAACTTTGTCACAGCTATTTCGCCGACTCAAATGAATGGTCCAAACATTGCAAACGTAAGCATCCCAAATACGTGAGGCGAAAACGATATGCGTGCGGCAATTGTTTGGAAAAGTTCGACGACATCGTATCGCTTCAACGTCATAAAAAGTACGCCTGTTCCTCGAATACGTCGAAAACCACACTCGCGGGCGCTTCCACAAATTCAAACGATTGTGAAACTTTTTACGTGTGCAATGAATGTGAGGAAGTGATGCAAAATCAGTcggaatttgaaaatcacaaAAAAACTCACGATGTCCCAAAGCCGGCCGAAGGTAGTACCGAAGTCGTGCCGTTGAAATCTCCGTCTACGACAATGGCTGTGAATATAAACGGAATTTTAACGACGCCGAATTCCAGCAAACAGAACATCTTTACGATTTTGGTATCTAATGGTGGTAAAGTGGTACCGGTCGTCGTTCCGTCCATTTACTGCGTGAACGTGCCGGTACAACCGCCGAAAATAACTTCGATACGACGAGAAATCATGGAAATTTCCAGCGACGAGGATACAGAGAAAAAATTTCCCAAACTCGCGGCCATGCTAAAACAGCCAAAGACCACCGACATCCCCGACGAAAAGGAGTCTCAAAAACAAGAAGCCGTTCCTCCAAATGGCGACGTAATTGTCCTATCGGACGACGAAGAGCCGTCCCGGTCGACGAAGAATCTCGAAAAAACGTCGCCGACGGTTCCGATCCCTGCCagagtaaattttataggtagttTCGAAACGTTTATCAAAGATCAGAATTGCATTCCGGTACCGTTACCGAAAAAGCCCTTGGCCGATCCCAAAACGACCAAAGTCGCCGAAGAGATCGTCATCGAAAAAGATAACGTCGATCAGCGAAAAACCGTCGACGTCGTTCCGGTTGCGACGCCAATCGAGACGGTCGTTCCGGTTGCGACGCCGGATTTCGTCGATCTAACATTGAGAGACCCCCTTCAGAGCGGCGAAAGTTCATCGTCCGAATCTACACGGATGAGTCCGTCGTCTTCTGTGCAAGAATCGAAGCAGACGCCgaaaatttacgtaaaaaacaTACAAGACCTGATGGCTCCTGTAACGACGTTGCTGGAGAAGGATTTTCCAGAGGAATCGGATAAATTGGTCATCGATCTTTCTGGCCTGGAAGATTTCATGCCGGATCCCATATCGCCACCGGCTTCGCCGGCAAAAGAGACTCCGAAGGTGCCGACCTTAAAGACATATAAAGCGTACCCGCCTTTTCCACCTACGAACTGTACGACTTGCGGACTGTTGTTCAAGAAACGCCGCACATGGCGCAAACATCAGCGCATCGGATATCTACGGAACGCCTGCAAAATGTGCAGTTTCACCAGTTGCAGCAAAACTTTGCTTAAAAAGCACTATATCGAAATTCATAGTAGAGACCATTTCTGTCACAAGTGTCAAGGGGGTTTCTTGACCCCAACCGAATTTCGTAATCATGGCTGTGTGAAGCCTGCACTCGATGATGTTGTTCCGACCTCGGATTGA
Protein Sequence: MAVKDDSIKTPAKTFKCVLCEKEFCKKQSLKYHSARHVQDYKVKCDQCEKGFYTMLDFKRHYAVKHKGLRFVCNHCKKTFVDEYCFKRHIKTHDTNYVESEYKCCECNTVYKTRGGLNVHMKKHKNITYICDICGKSVSSKSSLNHHIMVHTGEKPFVCETCGKCFNKKMLLRIHERIHTKIKPYSCEICNKSFSQRSTLTVHLRYHTGHRPYKCEICQKRFVTKTLLKVHAKVHGTALVDIFVPLSETVQEVVHQTIYECEVCSQIFSTKKEYLAHHMNEFGETFCCCRCDAIFATTTELYGHYEIHKDNNIVIETEENPFEYTENVEAVMNIPSEPTNEAEELLYILDGSQCINEVVIEEEAETQELETESSPVKPENYTIVQVEHGYMLPSVFKGQLGTKRRYKKKTSESMPEYLGDEDSSTEMTQYEATSSKGSASSSKTRPKRRHELPDFSATNYSIMNPNEEVDIVHYKCLRCEQLFINKFTFFKHIEKGKCYINSCDVCCTSFTRNSDFYNHYLSEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTVREYRNHYKNRHMGIRHKCHSCGRSFADEYYFKRHLATHEKALTAKLQLSVYKSLYKTHTKLRTKRVTNVNTRQTKRQSNNLVAMLKKKYKLKDCSVVLTDFAKLPPPNKKQSEVSKSKIVQKSPPKTKTGSSSSLPTLNLFGKKFVKLLYKCAQCKEAFDDSVKLKCHVMMHKMKQDERKKKSASTSCYMCLKKFPDRNALKTHLRTHTRKRPMSAKNSNANGNQIAPQSSHVRDTASKPYGNNSELRYRCNICMKKFADLDQMREHKRMHGVSSDVTSENVTDTVESADTTSTTPVLQTNDEIVTLVTDNEPTTPAKEKKIISETPKHTEIGVPELLSPTFKCCDQIFLDRKCLMKHVHGMKATPNNTCLSNPIYVCKLCHSYFADSNEWSKHCKRKHPKYVRRKRYACGNCLEKFDDIVSLQRHKKYACSSNTSKTTLAGASTNSNDCETFYVCNECEEVMQNQSEFENHKKTHDVPKPAEGSTEVVPLKSPSTTMAVNINGILTTPNSSKQNIFTILVSNGGKVVPVVVPSIYCVNVPVQPPKITSIRREIMEISSDEDTEKKFPKLAAMLKQPKTTDIPDEKESQKQEAVPPNGDVIVLSDDEEPSRSTKNLEKTSPTVPIPARVNFIGSFETFIKDQNCIPVPLPKKPLADPKTTKVAEEIVIEKDNVDQRKTVDVVPVATPIETVVPVATPDFVDLTLRDPLQSGESSSSESTRMSPSSSVQESKQTPKIYVKNIQDLMAPVTTLLEKDFPEESDKLVIDLSGLEDFMPDPISPPASPAKETPKVPTLKTYKAYPPFPPTNCTTCGLLFKKRRTWRKHQRIGYLRNACKMCSFTSCSKTLLKKHYIEIHSRDHFCHKCQGGFLTPTEFRNHGCVKPALDDVVPTSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -