Rgig023815.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000088.1:18519808-18522991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.1 13.9 7.1 1 23 127 149 127 149 0.98 2 11 8.5e-06 0.00079 20.5 3.5 1 23 153 175 153 175 0.98 3 11 6.1e-05 0.0057 17.8 3.3 1 23 182 204 182 204 0.98 4 11 1.1e-05 0.001 20.2 0.2 2 23 211 232 210 232 0.96 5 11 1.9e-06 0.00017 22.6 3.5 1 23 238 260 238 260 0.98 6 11 4.7e-05 0.0044 18.2 4.8 1 23 266 288 266 288 0.98 7 11 0.00015 0.014 16.6 0.0 1 23 294 316 294 316 0.96 8 11 1.4e-06 0.00013 23.0 0.5 1 23 322 344 322 344 0.99 9 11 0.00015 0.014 16.6 3.5 1 23 350 374 350 374 0.98 10 11 0.00085 0.08 14.2 3.7 1 23 380 402 380 402 0.98 11 11 1.2e-06 0.00011 23.2 0.5 1 23 408 430 408 430 0.98
Sequence Information
- Coding Sequence
- atgttaattaattgtacttCCCTGCAgcCATATAAAGGAGATGGTCTACCACCAGAAATTTGTACAGAGTGTGTAATACAAGTTACACAAGCTTATACATTTAAACAGCAAGTTGAAAATTCAGACAGCATTTTAAGACAATGTATATATCTTTGTAAGGATGAACAACCGCCTATAGCATTATCAAATATAGGAAACTTCAATTTAGATTTAACAAGTAAAATCCAACCGAAAAATAACCCGAATAACATTAGTGAAGGCGTAGAAGAATTAAAAGAGCAGGATCACAATGGCATTTTCGAAGAGAACTATTGCCAAGATAGTGAAGATACAAAAGATACCGACGTAAATGGTTGTAGTGAAATTAATTCAGATCTTCATCAGTGCTCCGAATGCTTTAAGGAGTTTTGtaCTGCCAAAGGCTTGAAAAACCACAAAAAGAAACACAGCTTCACTCACAAGTGCAGCACATGTACTGAAActttttctacaaattttGCTCTTAAAACTCATATGCGTGCCCATGGTTTAGGAGAGAAAAAACACAAATGTTCTCAGTGCGATAAAAGATTTTATGCCCAAAATGAACTTAGaATACATGTAAGGAAGCACACAGGAGAACGTCCACTAGTTTGTTCGACTTGCGGTAAAAGATTTGCCGATCCTAGAAGTTTAGcaaaacacaataaaatacatacaggagaaaaaaaatttgaatgcgatatttgtaataagaaatttattcattCATATACTTTAACGACACATCGTAGGATACATAcaggtgaaaaaccatttataTGTTCTGTATGTGGACATTCTTGTACGACTTCTACGCAACTTACTTTACATACCCGGACTCATACACAAGAAAGGCCCTACCTTTGTACTCTCTGTCCAAAGGCATTTGCAAGTGGTAGTGGTTTAGCAACCCATCAAATAACACATACGGGaataagaaaatatgtttGCTCTTTTTGTGGCAAAGGTTCTAGAACATCCACGGATTTGACAGCTCATTTACGCACTCACACTGGGGAGAAACCTTTTGAATGTAAAGTACCAAATTGTTCAAAAAGATATAAAACCCATAGCAAGCTCAGTGCACATACCAGAACACATACAGGAGAAAAGCGACACCAGTGTTCGGTGTGCTGTAAAGCTTTTGCAGATACTACACAACTTAAAACACATATGAACATTCACACAGGTAGTAAACCATATATGTGTGCCGTGTGCGGATATAGATTTACACAGTCTGGATCTTTATATACTCATATgaaaattcacaaaaaaacaGAAACTTTATGA
- Protein Sequence
- MLINCTSLQPYKGDGLPPEICTECVIQVTQAYTFKQQVENSDSILRQCIYLCKDEQPPIALSNIGNFNLDLTSKIQPKNNPNNISEGVEELKEQDHNGIFEENYCQDSEDTKDTDVNGCSEINSDLHQCSECFKEFCTAKGLKNHKKKHSFTHKCSTCTETFSTNFALKTHMRAHGLGEKKHKCSQCDKRFYAQNELRIHVRKHTGERPLVCSTCGKRFADPRSLAKHNKIHTGEKKFECDICNKKFIHSYTLTTHRRIHTGEKPFICSVCGHSCTTSTQLTLHTRTHTQERPYLCTLCPKAFASGSGLATHQITHTGIRKYVCSFCGKGSRTSTDLTAHLRTHTGEKPFECKVPNCSKRYKTHSKLSAHTRTHTGEKRHQCSVCCKAFADTTQLKTHMNIHTGSKPYMCAVCGYRFTQSGSLYTHMKIHKKTETL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -