Rgig009593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000021.1:1241905-1243970[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.003 0.28 12.5 0.5 2 23 231 252 230 252 0.97
2 14 0.042 3.9 8.9 4.4 1 22 285 306 285 306 0.94
3 14 6.5e-05 0.0061 17.7 0.9 1 23 313 335 313 335 0.99
4 14 4.4e-05 0.0041 18.3 2.6 1 23 341 363 341 363 0.99
5 14 7.3e-06 0.00068 20.7 2.7 1 23 369 391 369 391 0.99
6 14 8.2e-05 0.0077 17.4 2.5 1 23 397 419 397 419 0.97
7 14 0.00015 0.014 16.6 2.2 1 23 425 447 425 447 0.99
8 14 8.6e-06 0.00081 20.5 1.4 1 23 453 475 453 475 0.99
9 14 0.0013 0.12 13.7 2.3 1 23 481 503 481 503 0.98
10 14 0.0013 0.12 13.7 0.6 1 23 509 532 509 532 0.98
11 14 0.00015 0.014 16.6 4.4 2 23 539 560 538 560 0.97
12 14 0.00052 0.048 14.9 4.5 1 23 566 588 566 588 0.98
13 14 1.3e-06 0.00012 23.1 0.7 1 23 594 616 594 616 0.99
14 14 0.032 3 9.3 0.5 2 23 623 644 622 644 0.95

Sequence Information

Coding Sequence
ATGCACCCTTTCTGCAGAACCTGTTTTCAAGAAACATCCGATACCACCACATCGGATTCATTGGACCTCGAAAACCATAAACACCGACTGATATTTTGCATACCAGAAATGGATTTACGAACGTTATCCGACACAAAGCTGTGCAACGATTGCGTCGCGACCCTCGACGTGacctacaaatttaaaatgaggTGTCGAGAAGTGGCGGACAAGCGACAGTTTAACGAAACTGAAAGTTTTAAGGTGAAAAAGGATAACGGTTTGGGCAACAATACCTTTGTGGTTTGCAAAACTTGTTGTAAGGATGTTATGGATGACGATTTTTCGACCCAAGGACTATCTCATAAGCGTAAATTGATGATTTGTGTTCCGGAAATGaATCTACAAATCACGCCCGATATCGATCTATGTTGGGACTGTAAAATGGCACTCGACGAAATCTACATGTTCAAAATGAAATGCATAGATGCTGACAAAACGGTCAAAGAGCATCTGGCGTCGAATGACgtcgtaaattttaacgaatcgCCCGTGTGGCACAACGAATTTGTAAAATGCGAAGTAAGAATCGACGTGAACGAGTTCGTCGCAATcaaacaagaaattgattttgaaaatgacaACGAAATAGAAGATATGAAATTTATAACCGCAAAAATCGACAAAagaaagaagaagaagaagcgCCTCAAATGTCCGCAGTGTGAATACAATACGGTGCAAAGAAATCGTCTTTATATACACATGCGTATACATGCTGTCAAACTATTGAGACGTTCGCGGCGCCAGTGCAGTGGCGTGAAGACATCGAATTCGAAACAGCAAGTTCGCGAACGTATAGGCAAGCGACTATTTAAATGCATACATTGCGAGTACAGTTGCACACAAAAATCTAGTTTAGTGACGCACATTCATACGTACAGAGGCGAAAAGCCATTCAAGTGTTCGTTGTGCAATTACAGCACAGCGCAAATACGCGACTTAAAAGATCACATCCGCACGCACACGAGCAAGAAAGTGTACAGGTGTTCGCAGTGCGAATACAGCACAACGACGAAAGTCAGTTTAAAGAAACACATTTACACGCATACCGGCAAGAAACCGTTCAAGTGCTCGTTGTGCCAGTACAGCACCACACAAAGGTCGACTTTAAAAGATCACATTCGCACGCACACTGGCGAAAAACCGTTTAATTGTTCGCAATGCGATTACACCGCTTCGaatcgatataatttaaaaagacacATTTTCAAACACAGCGACAGGAAGCCGTTCAAGTGTTCACAGTGTCCGTACCGGTCCGCTCAAACGTCCCACCTTAAAGATCACATCCTCACCCATACCGGTGAAAAGCCGTTCAAGTGTCCGCAGTGCGATTACAGGGCCACGAGGAAATCGCGTTTGAATCGACATATTCTCACGCACAATGTCGATAAGCCGTTCAAGTGTTCGTTGTGTAAGTACGGTGCCGTGCAGTTGTCACATTTGAAAGATCACATGTTTACGCACACCGGCGAGAAGCCATTCAAGTGTTTACAGTGCGAGTACAGCGCCGCGAGAAAATCGGCTATAAATCGACATGTTCGTACCACGCATTCGAGCGACAAGCCATTGAAATGTTCTCAGTGCGAGTACAGCACCGCGCACCTGTCGCATCTTAAAAGTCATATTCGCACGCACACCGGCGAGAAGCCCTTCAAGTGTTCGTACTGCGAGTACAGCACCAGCCAACGAATCActttaaaacaacatatttGCTCGCACACCGGCGAGATGCCATTTAAGTGTACGGAGTGCGACTACGGCACCATAGTAAAAAGTAATTTGACGAAGCACATGCGCATACACCTCAATGAGGAGTTGTTGAAATGTTTTCTGTGTGATTATAGTACTGTAAGTACGTCGGATTTTATCGATCACACTTATGTACACATGAACGAGAAATCGTAA
Protein Sequence
MHPFCRTCFQETSDTTTSDSLDLENHKHRLIFCIPEMDLRTLSDTKLCNDCVATLDVTYKFKMRCREVADKRQFNETESFKVKKDNGLGNNTFVVCKTCCKDVMDDDFSTQGLSHKRKLMICVPEMNLQITPDIDLCWDCKMALDEIYMFKMKCIDADKTVKEHLASNDVVNFNESPVWHNEFVKCEVRIDVNEFVAIKQEIDFENDNEIEDMKFITAKIDKRKKKKKRLKCPQCEYNTVQRNRLYIHMRIHAVKLLRRSRRQCSGVKTSNSKQQVRERIGKRLFKCIHCEYSCTQKSSLVTHIHTYRGEKPFKCSLCNYSTAQIRDLKDHIRTHTSKKVYRCSQCEYSTTTKVSLKKHIYTHTGKKPFKCSLCQYSTTQRSTLKDHIRTHTGEKPFNCSQCDYTASNRYNLKRHIFKHSDRKPFKCSQCPYRSAQTSHLKDHILTHTGEKPFKCPQCDYRATRKSRLNRHILTHNVDKPFKCSLCKYGAVQLSHLKDHMFTHTGEKPFKCLQCEYSAARKSAINRHVRTTHSSDKPLKCSQCEYSTAHLSHLKSHIRTHTGEKPFKCSYCEYSTSQRITLKQHICSHTGEMPFKCTECDYGTIVKSNLTKHMRIHLNEELLKCFLCDYSTVSTSDFIDHTYVHMNEKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-