Rgig018714.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000066.1:341198-343253[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.02 1.9 9.9 1.6 2 23 139 160 138 160 0.95 2 14 1.1e-05 0.001 20.2 0.4 1 23 166 188 166 188 0.97 3 14 0.0041 0.38 12.1 0.1 1 23 204 226 204 226 0.98 4 14 1.3e-05 0.0012 20.0 0.3 1 23 232 254 232 254 0.97 5 14 0.0068 0.64 11.4 1.4 1 23 381 403 381 403 0.91 6 14 0.00013 0.012 16.8 1.6 2 23 410 431 409 431 0.96 7 14 5.8e-06 0.00054 21.1 2.0 1 23 437 459 437 459 0.99 8 14 1.7e-05 0.0016 19.6 0.1 1 23 470 492 470 492 0.98 9 14 1e-05 0.00094 20.3 1.4 1 23 498 520 498 520 0.98 10 14 0.00082 0.077 14.3 0.1 1 23 526 548 526 548 0.97 11 14 0.00053 0.05 14.9 1.2 1 23 554 576 554 576 0.95 12 14 4e-05 0.0037 18.4 4.0 1 23 582 604 582 604 0.97 13 14 9.6e-07 9e-05 23.5 2.3 1 23 610 632 610 632 0.98 14 14 0.024 2.3 9.7 8.4 1 23 638 660 638 661 0.95
Sequence Information
- Coding Sequence
- ATGAACGTAAAAGTTATTTGTCGCATCTGTTTATTGGAAAACGTGGAATTTACGAGTATTTTTAGAGAAGACGAAGATGAACCCAACATAACGACAATGTTGGCCGAAGTCGCGTCGATAcaagtTAAATCGGACGACGAGCTTCCTTCCACGATTTGCACGACTTGTTGCTCCAAATTGAGCGCCGCCTTCGATTTTCGCAAGCAAATTATAGCGACCGACAGAAAATTGCGCGCGGATTTGTCTAAAGACgacgttaaaattttcaattgcaAAGTAGAAAACGTGGAGTTTTGCGAGCCTATGGGTCAGTTGCCCGATGCATCAGTTGATAATGATATCGGTGATCGGTTATTGGTTATATCGGCGGAACAGGATAACGAACGTACCGATTGTAAGACCGAAAAGGATTGCTCGTGTCTGTCGTGCGGGAGGCTTTTTCAAACCGTTGCCAGTTTAAGAAGTCACGCGAGGACCCATTCGAACGACGAACCGCACGTGTGCAGCTTGTGCGGTAAAGAATTCAAGATGGCGTGGTTGCTTAAAATCCACATGCAGATACACGAAGGTGTCGATAATAGCGACGTGTCGCTCGACAGAGATGCGGGTTATCGGTGTCCGTCGTGCGGGCAGCTATTCGAGGATCTCGCGACCGCAATAAGTCACATGAAAAATCATTCGAGCGAAAAACCGCACGTGTGCGACTTGTGCGACAAAGAATTCAAGATGCCGTGGTTGCTTAAAATTCACATGCAGATACACAAAGGCACTAAACAATACTCTTGTGACGATAATGATCTATTAGATGATAATGATGTATCAAACAATAACGACGTACCAAACAATAATGATGTATCAAACGATAGCAATGTATCGAACAATAATGATATATCAAAAGATAACGATGTACCAAATGATAATTACGTATCGAACGATAACGATGTATTGATCGACAACGATATGTCAAAAGATAACGATGCACCGAACAATAATGACATATCAAACAATAGCGACACATCAAAAGATAACGATCGATCAGTTGATAATGGCTTATCGATTGTTAATAATATCAGTTACCGATTACGGTCCATACCGTTTAAGAGAGGCAAAAGGTCGCCCGCGAAGAAGGCCCAGAAAAAGCATTTCTGTGCAGAATGCGACAAGTCGTTTTCGACCCAGTTAAGGCTGGACGCCCACAACGCCAAACACACCGGCATCAAGCCGTTACATTGCGAAGTTTGCAATAAGGGCTTCACGTCGCATTGGTCGCTGGCAATACACGCGCGCACGCACACGGGCGAGCGGCCATTCAAGTGCAAAGTTTGCGACAGGCGTTACATCCAAAAGTCCGGACTTAGAACGCACGAGAAAACCCATTGCGACGAAACGCGGGCCGGCACCAAGCCGTTCCGTTGCGAAGTTTGCAACAAGGGCGTCACGTCGCGCTCCTCGCTGGCAGTGCACGTGCGCATCCACACGGGCGAGCGACCGTTCAAGTGCAAAGTTTGCGGCAAGTCCTTCATTCAGATGTGCGGCCTTCAAGTTCACGAAAGAATTCATTCCGACGAAAAGCGATTCATATGCGAAGTCTGCAGCGTGCCATTCAAAGAACTTCCGAGTCTGAGACGGCACATGTTCATTCACCAGACCGAAAGGAATCACTCGTGTCCGACGTGCGGAAAGCTTTTCAAGACTCTCGCGCGGCTAAAGCAGCACGCGACGATCCATTCGGACGAAAGGCCGCACGTGTGCAGCGTGTGCGGCAAGGGATTCAAGCGGCGAATATTTCTTACGCACCACACGCGGATACACGACGGCGTCAAGCCGTACGCTTGTAAGATTTGCGGTAAAAAATTCACGCAGCAAGGCTGCATGACCATGCATATGAGAGTACACACCGGCGAGAAGCCCCATCCGTGTACCATGTGTGCGGGGAGATTCACGCATCTACATCATTTAGTTAATCACATGAGGGTCCATCATCGAAAAGAAGTAGCCAAGAAATAG
- Protein Sequence
- MNVKVICRICLLENVEFTSIFREDEDEPNITTMLAEVASIQVKSDDELPSTICTTCCSKLSAAFDFRKQIIATDRKLRADLSKDDVKIFNCKVENVEFCEPMGQLPDASVDNDIGDRLLVISAEQDNERTDCKTEKDCSCLSCGRLFQTVASLRSHARTHSNDEPHVCSLCGKEFKMAWLLKIHMQIHEGVDNSDVSLDRDAGYRCPSCGQLFEDLATAISHMKNHSSEKPHVCDLCDKEFKMPWLLKIHMQIHKGTKQYSCDDNDLLDDNDVSNNNDVPNNNDVSNDSNVSNNNDISKDNDVPNDNYVSNDNDVLIDNDMSKDNDAPNNNDISNNSDTSKDNDRSVDNGLSIVNNISYRLRSIPFKRGKRSPAKKAQKKHFCAECDKSFSTQLRLDAHNAKHTGIKPLHCEVCNKGFTSHWSLAIHARTHTGERPFKCKVCDRRYIQKSGLRTHEKTHCDETRAGTKPFRCEVCNKGVTSRSSLAVHVRIHTGERPFKCKVCGKSFIQMCGLQVHERIHSDEKRFICEVCSVPFKELPSLRRHMFIHQTERNHSCPTCGKLFKTLARLKQHATIHSDERPHVCSVCGKGFKRRIFLTHHTRIHDGVKPYACKICGKKFTQQGCMTMHMRVHTGEKPHPCTMCAGRFTHLHHLVNHMRVHHRKEVAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -