Rgig009254.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000019.1:4060834-4068115[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.0076 0.71 11.3 3.5 1 23 173 195 173 195 0.98
2 40 0.0093 0.87 11.0 0.9 2 23 201 222 200 222 0.96
3 40 0.00087 0.081 14.2 0.5 1 23 248 270 248 270 0.97
4 40 0.018 1.7 10.0 0.5 1 23 349 371 349 371 0.97
5 40 2.9 2.7e+02 3.1 0.4 2 23 398 419 397 419 0.93
6 40 7.9 7.3e+02 1.8 0.4 1 23 455 477 455 477 0.93
7 40 0.11 10 7.6 3.2 1 21 483 503 483 504 0.95
8 40 7.3e-05 0.0068 17.6 0.7 1 23 509 531 509 531 0.97
9 40 0.36 34 6.0 0.3 1 23 887 909 887 909 0.97
10 40 0.085 7.9 8.0 1.3 1 23 915 937 915 937 0.98
11 40 0.047 4.4 8.8 3.1 1 23 949 971 949 971 0.95
12 40 0.00018 0.016 16.4 1.8 1 23 977 999 977 999 0.98
13 40 0.21 19 6.7 0.6 1 23 1010 1032 1010 1032 0.97
14 40 0.14 13 7.3 3.0 2 23 1039 1060 1038 1060 0.95
15 40 1.1 1.1e+02 4.4 4.9 1 23 1066 1088 1066 1088 0.98
16 40 0.0004 0.037 15.3 0.8 1 23 1094 1116 1094 1116 0.98
17 40 0.007 0.65 11.4 1.9 2 23 1123 1144 1122 1144 0.96
18 40 0.091 8.4 7.9 0.3 1 23 1166 1188 1166 1188 0.97
19 40 1.4 1.3e+02 4.1 1.4 2 23 1195 1216 1194 1216 0.95
20 40 0.44 41 5.7 4.4 1 23 1222 1244 1222 1244 0.94
21 40 0.0005 0.047 15.0 0.3 1 23 1250 1272 1250 1272 0.98
22 40 0.0016 0.15 13.4 2.9 2 23 1279 1301 1278 1301 0.96
23 40 0.073 6.9 8.1 1.4 1 23 1347 1369 1347 1369 0.97
24 40 2.4 2.3e+02 3.4 5.7 1 23 1403 1425 1403 1425 0.94
25 40 0.0018 0.17 13.2 0.5 1 23 1432 1454 1432 1454 0.99
26 40 0.012 1.1 10.7 2.1 1 23 1460 1482 1460 1482 0.97
27 40 0.033 3.1 9.2 0.7 1 23 1488 1510 1488 1510 0.94
28 40 0.0061 0.56 11.6 2.8 1 23 1543 1565 1543 1565 0.98
29 40 2.4 2.3e+02 3.4 2.4 1 23 1571 1593 1571 1593 0.96
30 40 0.0073 0.68 11.3 1.9 1 23 1599 1621 1599 1621 0.97
31 40 0.01 0.96 10.8 5.1 1 23 1627 1649 1627 1649 0.97
32 40 0.045 4.2 8.8 2.2 1 23 1655 1677 1655 1677 0.98
33 40 0.52 49 5.5 4.2 1 23 1683 1705 1683 1705 0.95
34 40 0.012 1.1 10.6 2.4 1 23 1711 1733 1711 1733 0.99
35 40 2.8e-05 0.0026 18.9 2.6 1 23 1739 1761 1739 1761 0.99
36 40 0.0034 0.32 12.3 1.4 1 23 1767 1789 1767 1789 0.99
37 40 0.008 0.74 11.2 0.4 3 23 1850 1870 1848 1870 0.96
38 40 0.0012 0.11 13.8 0.7 1 23 1876 1898 1876 1898 0.98
39 40 0.00017 0.016 16.5 3.1 1 23 1904 1926 1904 1926 0.98
40 40 0.0014 0.13 13.6 0.7 1 23 1932 1954 1932 1954 0.98

Sequence Information

Coding Sequence
ATGAACGTCTATTGTAGAACATGTCTTCAGCAAATAAGAAACAGCGATAGTCTTTTGGATATCGAAAATGATTATAAGTTATTCGATAcgattaaacataaatttatgaTGTGTGTTCCAGAAATGgATCTCTCTATAATACCACGGGCAAAAATTTGCAAGGATTGCTACGCATCCTTAAGTAATGCATACGACTTTAAAATTCGGTGTCATAAAAGTGAAGTAAAGATCATCAAATTCCTTAAAAAATATggtattatcgattttaagcATCTATCAGATTTATCTATAACCGAAAATGGTGCTAATTCATCGAGCAATGTAACGGacgacttaaaatttgaagattTAACTATTAAAGAGGAAGAAGTTATTTTAGATGAAGAAATACTTAATGTCATGGTAAACAAAGATAAAGCTGTTGTTGTTATCGACGTGGACGATGAAAAGACGGAAACGACTGTTGTAgaagaaattgttaaaaaccAAAGGAGGAAACCAGTTGCCGAAAAAGAATATCAGTGTTCGAAGTGTGAATACAGAAGTCGCAATATACACGATTTACGGAAGCACATCAGCAATCATCCTAAAGTGATGTTAGAGTGTGCATTGTGTGAGTATAAAACTAGACGGAAATTAGATTTGAAGCGGCACGTGCGAAATCATGCAAAGGAACAGTCGGGCACCAATGTAAAgttggttttaaaaaaacacatcCTTTCACGTCAATTAGCTAGCAAGTTTCAATGTCTAATGTGCGATTATAAGAGTAGTAATAAAGCGGATTTGATGAGACATGGTCGTGCACATGCTAAAAATAGCCTCGATTTCAAAAGATACATAAATTATACCCTCGATAAGTTTGATGGAAACGTATATCAAAATGAGGTGGAAATGAAGAGAAATGGTCAAAAATTTCATTGTTTGTCATGcagttttaaaactaattataaatgttcttTAATGAGACACTCTGTGTTGCATCGAACTAAACAACTACCGACTAAAACTAACGAGCCAATTTTAGAGAAGGCCCTCGAGGTGTTTCGATGCAATACCTGCGATTTTGAAACTGACGACAGAAACGCTTTAACAAGTCATCTCCTGTTGCATCGAACTAAGAGAACCTCGATTAAAACTGGCAAACGAAATTTACAGAAGAAACCTCCGAAGCGTCTCAGAAAAGTTTTGCAATGCTCATGGTGCAGTTATAAAACCGCATACAATTTAGCTTTGTACAGGCATTCTTTGTTGCATCGAAATGAACAACCTTCGATTAAAGCCGACGAGCAAACTTTAAAGGAGACGCTTCCGAAGTCAGTTTTAGAAGTTAAAACTAGAATACATCCAGGGAATATGAAATTTGAATGTTCTTGGTGCGATTTTCGAAATGATTTTAAACCAGCttttgtaaaacatttgttgtcACACACGGACAAGAAAACATACTGCTGTTCCGTGTGCAATTACAAAGCTGCCAACAGCAGACAATTGAAGAAGCATATTTGCGATGATGCGAAGTTATTTAAATGTCCGAAATGCGATTATGAAACTAGAAGGAAGACTGCATTGGAGCGTCATCTTGCGAATCACTCAGTTGTACAGTTGAAGAATAATAGTGATCTTTACATTCCTTGGAACTCGGATTTGGGACGAAGTAAACGAAAATCTGATTGGAAGCAACATGTCATGTGTCGCACGAGTCCTCGAAATACAAGGAAAGAACTTGTAGTTAATGTTGTCAGGATGGATTTAAGCAAGTATCAATCAACGAATAGTTCCCTGTGCAAGTACAAAAGCGATGACGAATCTGATTTGAAAACGCGCACTTGCACGCATGTTGTCGATAAACCACATCGTTTGGCATCCGATTCGGAAAATTCAAATGATCGCGCAGGTGTTGAATCGGACGACGACAATTTCTCTCGATGGGCAGCTTTTGATTTAAAACCACAAGATTTCGAGACCGATGAAGATTCCGATTCGGAGCAACATCTCACGAGTCGTACAAATGAAGAATTGACAATCAACATTGATAAATTGGATTCAAGTAAAACTTTAGCTGCAAAGTGTAATTACGAAAGCAACGACGAaacgaatttgaaaaaatacggTAGGACACGCGTTATTAAGAAACCACATAGCTCGAAGTCTGATTCGAAAAATTCCAAAGTTCGCGCAGATGATTGTTCGACGGATGACAGCAGTAGCAACAGTTACTTTCAGgtatttgaattaaatcgaCACGATTTTGAGACTGACCAAGATTCCGATTCTGAGCAACATCTCGCGAGTCATACAAATAAAGAATCGGTAATCAACGTTGATAAATTGGATTTGAGTAAAACTTTAGCCGCAAAGTGTAACTACGAAAACAACGACGAAATGAATTTGGAAAAACACAGTAGTACGCGCGTTATTGAGACACCACAGAGCTCGAAGTTTGATTCGAAAAATTCCGAAGATCGCCCAAATGATCGATCGACGGATGACAACAGTAACGACAGCTACTTTCAACAGGAAGGATTCGAATTAAATCGACATGATTTTAAGACCGACCAAGATTCTGATTCAGAGGAACATCTCGTGAATCATACGAGTAAAGTACTATTAACTGACGTCGATAAATTGGATTTGAATGCAATACAAACAATGAAATTTCGTTGTCCTCTGTGCACGTACGAAAGCAACAATGAACCGGATTTTAAAGGACACGTTTATACGCATATCCTTGAAAAACTGTTCAAATGTTTACAATGCGAATATAAAACTAATCGGGAGATGGATTTTAAAGAACACATCGAGAGTCATATAGACAAAGAACCTCTCCAATGCGAAAAGCCATTTCATTGTTCTCAATGCGACTATAAAGCTAGTAGCCTGAGCAATTTAAAAGTGCACTCTTACCGACACACAGGTGAGAAACCTTTTAAATGCATGAAGTGTGACTTTGCGACCGTCCGCCAATCGACTCTGAAACGACATCTTATGTCTCATACGATCGGTGCAAAGACACAAAAGAAACTGTTCGAGTGTTCAGTGTGCGATCATAAAGTCGAccggaaaattaaatatgaccAACACATCGCGGTTCACACAAGCGAAACGCCACTACATTGTTTGGAATGCCGATACTCCACCAGCAATAAGGTATTTTTAACGAGACACGTATTTACTCATCGTGGCGAGAAAAGGTATAACTGCGCATATTgcaattataaaagtaatcatATCATCCACTTCAAGTGGCATTTACTAAAACATAGCGAAAAGAAACTCTATAGATGTTCGATTTGTGGTTTCACAAGCGAACGTAAGGATGGTTTAAAGGTTCACCTCTACAAACACAGCGGCGAGAAACCCCTTAAATGCACTAAGTGCGAGTACGCGACCGCCTACCATTCCACGCTGAAACGACACCTTGCATCTCATACGACCGGAAGAGCGAAGAAGAGACGAATAAGAAGAATAGAAGAGACAAGAATACAAGAGACGTTCGAGTGTTTAGTGtgcgattataaaattgacCGGAAAATCGAATATAAGCAACATATTGCTAATCACACAAGCGAAACACCACTACATTGTTTAGAATGTAGATTCGCCACCAATAATAAGGTATCTTTAGTGACGCACGTATTTACTCATCGTGGTGGGAAAAGATATAACTGTGCACATTGCgaatataaaagtaattacaGCAGCCATTTCAAGTCGCATTTAGTAGCACATGGCGGCGAGAAACCCTATCAATGTACGATTTGTGGATTCGCAACCGGCCGTAAGGACGGTTTAAAGGTTCACCTTTACAAGCACAGCAATGAGAAATCAATCAGTTGTTCCATGTGCGACTTTAAAACCACCTATCGATCAAATTTAACACATCACATCATGATGAAGCACGTGCAAAACGAGTTATATgtgaaacaatatttaaacaaaagaaagtTATATCGTTCAAAACTCAATGCGAAATCGAAACCCAAAATAAAACCAGAACAAGTTCAACTTCAACAAGAACTGGTCAAGATCAAAATGTTCAAATGTTTAGCATGCGATCATAAAACTAGTGATATGTCGAATTGGAAACGACACGTCGCGAGCCACAGAAGTAAACTAGCATTTCGGTGTTTACAGTGCATCTATAAGACCAAGAACAAGCTGCGCTTAGTTGAACATATTCTCTCGCATCGACAGGggttaaaatataattgtacGATATGCAAATATAAAACCAACGACAGCTCGCGCTTTAAAAATCATTGTAAGATTCACAATAATTCCGATGACTACTTTCGGTGTTCGATTTGCGAGTATAAGGCCGACcgtaaaataaagttaattgcACACCTTCGCACACATACTGGTGAGAAACAATTTCAGTGCGAGACGTGCGGTTATATGACCGATTATCGATCAACTTTCAGGAATCATAAGTTACTCCACGTAGGCGCAAAGGCTTATCAATGTTCAAAATGTCCATATAAGGCAGAAACGAAACCGAAATTAAAAAGACATTCTGTAGTGCACAACGATTTATCGTTTAAATGTTCGATGTgcaattataaaactaattgtGAAAGATATTTGAAACAACATGTCGATAAACACACGGCGAATAAATCGTTCGAGTGTTTCGTTTGCGAGTATAAGACGTATAAAAAATCGGATTTGAATACACATTTAAAGAAGCACAATTACGAAAATCATCATAAATGTTCTGTGTGCGATTTTACGACGATTTATAAGACAATTTTTTTGCGCCATCTTAGCATACATACGGGCGAGAAACCGTTCAAGTGTTCGCAATGCAGTTATAAAACTAGATATAAAGCATCTTTGAATACGCACCTTCTCGCGCATTCCGGCGAAAAGCCGTTTAAGTGTGAACACTGCGATTTTAAAACCACCCATAGATCAGCTTTGAGGCTTCACGTTTCCAACCACTTCAACCGGGAGGAATACAAATGTTCCGAGTGCGATTATAAGACTAAGCTGAAGTTATCTTTGAAGATGCATTCTCTTACGCACACGGACGAGATAATTTATAGATGTTCGAAATGCTCATTTACATCTAAACATAAAACGGCCTTATACACGCACGCTGGTAAACACGTCGGGGATAAACCGTTTCGTTGTACAGAATGCGAATATAGCACCCACCTCAAATCTTCTCTGGTTGTACACGTCCGTAAACATACGGGCGAAAAACCATTTCAGTGCACGGAATGCGATTACAAGACTACTCAGAAGTCGGCTTTGAACACACACACTCGTAAACATACAGGCATAAAACCCTTCAAATGCGAAAAATGCGATTATAAAACTGACATGAAAGTATTGCTGAAATCACATTTGCTaacacacacgaataataaaCAGTCGGAGGATTCAAAATCCGCTTTGAATACAGATCTTCTTCCGCAAGATGTCGAACGGTCCAACACAAACATTTCAGGTTGTATGCAGTCGCCGACGTTCTCACATTCGGACGATAAACCGTCGAAGTGTTCGGAATCGGTTTCGAATACAGTAGAAACATTTGGATGCGCGAATTGCGAATACAGAACTCGCAATAAGTCTGCCTTGAACAAGCACGTTTTGATTCACACAGGCGTAAAATTGTTCTACTGTGGTAAATGCGAATACATGGCCAAATTTAAATCTGCTTTGATCGTGCATATGCGCAAACATACGGGCGAAAAGCCGTTCCGCTGTTATGAATGCGATTACAAAACTACCCAGAAGTCTGCTTTGAACACACATACTCGCAAACATACCGgcataaaatgttttgaatgTGATAAATGTAAGTACAAGACTGACATGAAATCGGCGTTGAACGCGCATTTGCTGACGCATTCGAACAATAAACCGTCTAAATATTCGGAATCCATTTCGAATACGGATCTTTTTCAACGAGGCAATGAACCATTGAACTATTCGAAGTCGACTTTGAATACAGATCTTCATCCGACAGATGATAAGCCGTTGAACTATTCGACGTCCACTTTGAATACAGATCTTCTTGCGTGTGATAATGAACCGTCGAAGTGTTTGGAATCCACTGCGAATGCGGATCTTCTGCAAGTCGATAAGCCGTTGGAGTGTTCGGAATTAACTTTGAATACAGTTCTTTCAGAAGATGATAAGCCGTTGAACTGCTCAGAATCAACTTTGAATACAGACGTTGTCCCGCAAGATGATAAGCCGTCGGATTCTTTGGAATCCACTTCGAACACATCTGGTCTTCTTTCGAATTAG
Protein Sequence
MNVYCRTCLQQIRNSDSLLDIENDYKLFDTIKHKFMMCVPEMDLSIIPRAKICKDCYASLSNAYDFKIRCHKSEVKIIKFLKKYGIIDFKHLSDLSITENGANSSSNVTDDLKFEDLTIKEEEVILDEEILNVMVNKDKAVVVIDVDDEKTETTVVEEIVKNQRRKPVAEKEYQCSKCEYRSRNIHDLRKHISNHPKVMLECALCEYKTRRKLDLKRHVRNHAKEQSGTNVKLVLKKHILSRQLASKFQCLMCDYKSSNKADLMRHGRAHAKNSLDFKRYINYTLDKFDGNVYQNEVEMKRNGQKFHCLSCSFKTNYKCSLMRHSVLHRTKQLPTKTNEPILEKALEVFRCNTCDFETDDRNALTSHLLLHRTKRTSIKTGKRNLQKKPPKRLRKVLQCSWCSYKTAYNLALYRHSLLHRNEQPSIKADEQTLKETLPKSVLEVKTRIHPGNMKFECSWCDFRNDFKPAFVKHLLSHTDKKTYCCSVCNYKAANSRQLKKHICDDAKLFKCPKCDYETRRKTALERHLANHSVVQLKNNSDLYIPWNSDLGRSKRKSDWKQHVMCRTSPRNTRKELVVNVVRMDLSKYQSTNSSLCKYKSDDESDLKTRTCTHVVDKPHRLASDSENSNDRAGVESDDDNFSRWAAFDLKPQDFETDEDSDSEQHLTSRTNEELTINIDKLDSSKTLAAKCNYESNDETNLKKYGRTRVIKKPHSSKSDSKNSKVRADDCSTDDSSSNSYFQVFELNRHDFETDQDSDSEQHLASHTNKESVINVDKLDLSKTLAAKCNYENNDEMNLEKHSSTRVIETPQSSKFDSKNSEDRPNDRSTDDNSNDSYFQQEGFELNRHDFKTDQDSDSEEHLVNHTSKVLLTDVDKLDLNAIQTMKFRCPLCTYESNNEPDFKGHVYTHILEKLFKCLQCEYKTNREMDFKEHIESHIDKEPLQCEKPFHCSQCDYKASSLSNLKVHSYRHTGEKPFKCMKCDFATVRQSTLKRHLMSHTIGAKTQKKLFECSVCDHKVDRKIKYDQHIAVHTSETPLHCLECRYSTSNKVFLTRHVFTHRGEKRYNCAYCNYKSNHIIHFKWHLLKHSEKKLYRCSICGFTSERKDGLKVHLYKHSGEKPLKCTKCEYATAYHSTLKRHLASHTTGRAKKRRIRRIEETRIQETFECLVCDYKIDRKIEYKQHIANHTSETPLHCLECRFATNNKVSLVTHVFTHRGGKRYNCAHCEYKSNYSSHFKSHLVAHGGEKPYQCTICGFATGRKDGLKVHLYKHSNEKSISCSMCDFKTTYRSNLTHHIMMKHVQNELYVKQYLNKRKLYRSKLNAKSKPKIKPEQVQLQQELVKIKMFKCLACDHKTSDMSNWKRHVASHRSKLAFRCLQCIYKTKNKLRLVEHILSHRQGLKYNCTICKYKTNDSSRFKNHCKIHNNSDDYFRCSICEYKADRKIKLIAHLRTHTGEKQFQCETCGYMTDYRSTFRNHKLLHVGAKAYQCSKCPYKAETKPKLKRHSVVHNDLSFKCSMCNYKTNCERYLKQHVDKHTANKSFECFVCEYKTYKKSDLNTHLKKHNYENHHKCSVCDFTTIYKTIFLRHLSIHTGEKPFKCSQCSYKTRYKASLNTHLLAHSGEKPFKCEHCDFKTTHRSALRLHVSNHFNREEYKCSECDYKTKLKLSLKMHSLTHTDEIIYRCSKCSFTSKHKTALYTHAGKHVGDKPFRCTECEYSTHLKSSLVVHVRKHTGEKPFQCTECDYKTTQKSALNTHTRKHTGIKPFKCEKCDYKTDMKVLLKSHLLTHTNNKQSEDSKSALNTDLLPQDVERSNTNISGCMQSPTFSHSDDKPSKCSESVSNTVETFGCANCEYRTRNKSALNKHVLIHTGVKLFYCGKCEYMAKFKSALIVHMRKHTGEKPFRCYECDYKTTQKSALNTHTRKHTGIKCFECDKCKYKTDMKSALNAHLLTHSNNKPSKYSESISNTDLFQRGNEPLNYSKSTLNTDLHPTDDKPLNYSTSTLNTDLLACDNEPSKCLESTANADLLQVDKPLECSELTLNTVLSEDDKPLNCSESTLNTDVVPQDDKPSDSLESTSNTSGLLSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-