Rgig010735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000027.1:502115-504632[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.054 5 8.6 9.5 1 23 233 255 233 255 0.99
2 19 0.00046 0.043 15.1 1.7 1 23 261 283 261 283 0.98
3 19 7.7e-05 0.0072 17.5 1.4 1 23 289 311 289 311 0.99
4 19 0.00091 0.085 14.2 4.7 1 23 317 339 317 339 0.98
5 19 0.0005 0.046 15.0 1.9 1 23 345 367 345 367 0.99
6 19 1.7e-05 0.0016 19.6 1.1 1 23 373 395 373 395 0.98
7 19 9.6e-05 0.009 17.2 5.6 1 23 401 423 401 423 0.99
8 19 0.002 0.18 13.1 2.1 1 23 429 451 429 451 0.98
9 19 0.0005 0.047 15.0 2.9 1 23 457 479 457 479 0.99
10 19 0.0024 0.22 12.8 0.5 5 23 489 507 486 507 0.96
11 19 0.0096 0.9 10.9 0.4 1 23 513 535 513 535 0.97
12 19 0.0016 0.15 13.4 0.2 2 22 542 562 541 562 0.96
13 19 1.8 1.7e+02 3.8 6.7 1 23 569 591 569 591 0.98
14 19 0.0013 0.12 13.7 1.0 1 23 597 619 597 619 0.98
15 19 0.00043 0.04 15.2 2.3 1 23 625 647 625 647 0.95
16 19 2.4e-05 0.0022 19.1 3.7 1 23 653 675 653 675 0.99
17 19 6.1e-05 0.0057 17.8 0.8 3 23 683 703 681 703 0.98
18 19 0.00084 0.079 14.3 2.5 1 23 709 731 709 731 0.99
19 19 0.00028 0.026 15.8 1.0 1 23 737 759 737 759 0.99

Sequence Information

Coding Sequence
ATGTTTTGCTTACCAGAAATGgaATTACGAGCTTTGCCTGATATAAAGTTATGCGAGGATTGCGCCACGGTCCTAAATCTaacctataaatttaaaattaaatgtcgagATGTGGAGGACAAAATTAACAAGCGACATTTCGATCTGACCGATTATTTAATGATCAAACAAGAAATTAGTGTTTGCAGAACGTGTCTTGCATATGATATAGATCAATCGAGCGAACAATtgttctataaatgtaaactGATGCTTTGCATTCCAGAAATGGATTTACAGAGCAGAACGGATTTTAATCTGTGCAAAAATTGTCGTACAATACTGGATGCGATCTACccgtttaaaatgaaatgtttagatgtcgaaaaaataattaaaggaCATCGAGAATCATGTAGCGTTGTCGATTTGAGAAACTTGCCGGTGTACTCCaaagtatttgtaaaaaacgaaattagcAACGCAGAAGATTTAGCGATAAAACAAGAAGAAATCGATTTAATTGCCGAAGAGGAAATAATGCAGAATTTACGCGAACACACTGTAAAACACGAACTGAAATTCTGCGAACGTACAAGGGAGATGTTGAAATATCAAAACTGGGAGAAGCCATTTAGTTGTTCAGAGCACGTGTACGGCACCGCACGCATATCTAGTTTAAAAGCAGATGTCCGCATGTGTATTGGCAAagaaccatttaaatgttcgcgGTGTAATTACTGCACGACAAAGAAATATCATTTTGATTCGCATGTTCGCACGCACACCGGGGAGAAGCCGTTCAAATGTTTACAGTGCGATTTTAAAACGGcacaaaaaagtaatttagatAGACATATTTTCATGCACACCGATAAGAAACggtttaaatgtttacattgCGAATATGGCACTGCAcaaaaatctactttaattgAACATATTCGCACTCATTCTGGCGAGAAACCGTTTAAGTGTTCACATTGTGATTACAGTTCTGCCCATAAATTTAGTTTGAAAGAACACGTTCGTGCACATACCGGCGAGGAAGCTTTTAAATGTTCAGTATGCGAATACAGTACCGCacaaaaatatcgttttaataTCCATATTCGCAGGCACACGGGTGAGAAACCATTCGAATGTTCGCGGTGCGACTTTAAGACTGCACAAAAAGGTAACTTGGAAAGGCATATTCGCCGACATACTGACGAAAGACCGTTTAAATGTTCGCAGTGTAACTACTGTGCCAAACAAAAGTTTGACTTAACGAAACATATTCGTACGCATACCGGGgagaaaccatttaagtgtttgCAGTGCGAGTACTCTGCCGCAAATAAATACAGCTTAAAAGAACATATTTGCATGCATACCGGTAAGAGACCGTTTAAGTGTTTAAATTGCGAGTACAGCGCTATACGAAAATCATGTTTGAAAGAACATATTCGtacacatactggtgaaaaaccatttaaatttttatattgcgaGTATAGTACTGTACGGAAGTCCAGTTTGAAGGAACATCTGCGCTCGCACAACGGCGAAAGACCGTTTAAATGTTCAGAATGCGAGTATAGTGCTACACAAAAATCTGTTTTAGCAATTCATAATCTCAAACATACCGACGAAAGACCATTGAAATGTCCACAGTGTGAATACGGCGCCACACATAAATCTAAGTTAGAAGTACATATCCGCACGCGTACTGGTGAGAAACCATTCAAGTGTTTGCATTGCGCGCATTCTACCGCACATAAATCCTGTTTGGACGGACATATTCTTATGCACATTGGTGAGAAGCTGTTTAAGTGTTTCCGATGTAGGTATAGTACTGCACGAGAACCGAATTTAGAAAGACACGTTCTCACGCATATCGGCGATAAACCGTTCAAGTGTACGCAATGCGATTATAGCACTATAAGAAAGTCCTGTTTGAAGGAGCACATTGGCGCACATATTAACGAGAAACCGTACAAGTGTATGCAGTGCGAGTACAGTACCACACGAAAGTCGACCTTAAAAAGGCACGTTCGCAGACACACCGGCGAAAAACCGTTCGGGTGTCCGAGGTGCGATTACAGTTCTTCgcaaaaatttagtttagagAGACATGTTCGTACGCACGCCAGCGAAAAACCATTCAAGTGCGCGCAGTGCAATTACAGCGCTATAAGAAAATCTTGTTTGAAAGAGCACATCAGCACGCACACCGGCGAGAAACCGTACAAGTGTGTGTGGTGCGAATACAGTGCCGCacgaaaatttagtttaaaaagaCACGTTCGCAGACACACCCAAGGAAAACCTTGCTAG
Protein Sequence
MFCLPEMELRALPDIKLCEDCATVLNLTYKFKIKCRDVEDKINKRHFDLTDYLMIKQEISVCRTCLAYDIDQSSEQLFYKCKLMLCIPEMDLQSRTDFNLCKNCRTILDAIYPFKMKCLDVEKIIKGHRESCSVVDLRNLPVYSKVFVKNEISNAEDLAIKQEEIDLIAEEEIMQNLREHTVKHELKFCERTREMLKYQNWEKPFSCSEHVYGTARISSLKADVRMCIGKEPFKCSRCNYCTTKKYHFDSHVRTHTGEKPFKCLQCDFKTAQKSNLDRHIFMHTDKKRFKCLHCEYGTAQKSTLIEHIRTHSGEKPFKCSHCDYSSAHKFSLKEHVRAHTGEEAFKCSVCEYSTAQKYRFNIHIRRHTGEKPFECSRCDFKTAQKGNLERHIRRHTDERPFKCSQCNYCAKQKFDLTKHIRTHTGEKPFKCLQCEYSAANKYSLKEHICMHTGKRPFKCLNCEYSAIRKSCLKEHIRTHTGEKPFKFLYCEYSTVRKSSLKEHLRSHNGERPFKCSECEYSATQKSVLAIHNLKHTDERPLKCPQCEYGATHKSKLEVHIRTRTGEKPFKCLHCAHSTAHKSCLDGHILMHIGEKLFKCFRCRYSTAREPNLERHVLTHIGDKPFKCTQCDYSTIRKSCLKEHIGAHINEKPYKCMQCEYSTTRKSTLKRHVRRHTGEKPFGCPRCDYSSSQKFSLERHVRTHASEKPFKCAQCNYSAIRKSCLKEHISTHTGEKPYKCVWCEYSAARKFSLKRHVRRHTQGKPC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-