Rgig009520.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000021.1:857995-862661[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 5.4e-05 0.005 18.0 1.5 1 23 425 447 425 447 0.99
2 23 0.13 12 7.4 4.3 1 23 453 475 453 475 0.98
3 23 0.0033 0.31 12.4 3.0 1 23 481 503 481 503 0.98
4 23 0.028 2.6 9.4 4.4 1 23 509 531 509 531 0.97
5 23 1.5 1.4e+02 4.0 5.9 1 23 537 559 537 559 0.98
6 23 0.0014 0.13 13.6 3.6 2 23 566 587 565 587 0.97
7 23 0.0029 0.27 12.6 4.9 1 23 593 615 593 615 0.98
8 23 0.00058 0.055 14.8 3.7 1 23 621 643 621 643 0.98
9 23 0.0015 0.14 13.4 3.9 1 23 649 671 649 671 0.98
10 23 0.0001 0.0095 17.1 3.4 1 23 677 699 677 699 0.98
11 23 0.00069 0.064 14.5 5.5 1 23 705 727 705 727 0.99
12 23 0.00012 0.012 16.9 3.7 1 23 734 756 734 756 0.98
13 23 2.4e-05 0.0023 19.1 5.8 1 23 762 784 762 784 0.99
14 23 4.5e-05 0.0042 18.3 6.1 1 23 790 812 790 812 0.99
15 23 1.1e-05 0.0011 20.1 2.0 1 23 818 840 818 840 0.99
16 23 6.2e-05 0.0058 17.8 2.2 1 23 872 894 872 894 0.98
17 23 0.091 8.5 7.8 6.5 1 23 900 922 900 922 0.99
18 23 3.3e-06 0.00031 21.8 1.4 2 23 929 950 928 950 0.97
19 23 0.0045 0.42 11.9 1.8 1 23 956 978 956 978 0.98
20 23 5.9e-05 0.0055 17.9 8.7 1 23 984 1006 984 1006 0.99
21 23 0.0011 0.11 13.8 2.3 1 23 1012 1034 1012 1034 0.97
22 23 0.0002 0.019 16.2 1.0 1 23 1040 1062 1040 1062 0.98
23 23 0.0074 0.69 11.3 2.6 1 23 1068 1090 1068 1090 0.98

Sequence Information

Coding Sequence
ATGAGTGAAAAGGTGTACAGTGGCCACAAAGGCTGTAAAACAAGAAGTACAAGTGCAAAACGGAGTAAAATTAGTAATCGACGCCCGCCTAACCGCCATTCGTTCGAAGGCGATTCGGAGCACGTTAGTACCTCGGCTAAGAAATTCAAAACTACTGATTTAGACCGTGATCGCGAGACGGTGTCAAGCGGTAAGACTATAGTTGACATTGCGACTGACGTAGCCGTTATTACCTTCAATGACGGCTTGTCGGGTCTGTTTGTCGTTTACGATGCTCTTGGGTTGACTGTTGGACCAAACATGTACGAGTTTTGCATGGAAACGGACGCCAATCGCGTCAAAACCGCTGAGCATCGTATGTCCGATATCGCGAAAGAGGCCAGACGCAGCATTAAATCAGACAAAAAAGAAGAAGAGGAAAAAGGCCCTGGAAGGACAATTATATGCTGCAGGGATAGCAGAGTGaagGTACGTCACTACTTGAATCAGCCCAAAGTGCATCATAACCTCGAAATTTATAAGTGTTTCGGGGGTTGTTCGTTCGCGATACCGTCTTCGAAAATGCAGTACTTCTGCAGAACCTGCTTCCGACAAACGTCCGACAGCTCGTCGGTCCCATTGGACATGGACAATCACAAGCACCGACTAATGTCCTGCATACCAGAAATCGATTTGCGGGTGTTGACCGACACAAGACTGTGCGACGATTGCGTGGCGGCCCTCGATCGCAtttacaaattcaaaattaaatgtcgagCGGCGGAGGACGAGATTCATTGTCGACAGTTCGATGTGGCGACCGAACGTCTAACGATTAAGCAAGAAATTTGTTCGGACAACATCGGTGACCGTCTCACCTGCAGAACTTGCCTTATCGACATCGTAGATAACGACTACTTGTTTTCGAACCAACGACCGTTTTATAAGAGCAAATTGATGCGTTGCGTTCCCGAAATGGATTTACGAGCCGCACGCGATATCGACCTGTGCAAGGACTGTCGAGTGCAACTCGACTCGATCTACACATTCATATCGAACTGCCAAAACGTCGAGAGAAACATCGAAGAATATCTAAGATCGCACGACATCGTCGACTTCGGAGACTTATCCGTGTGGTGCAACGCCTTGGTAAAAGACGACATAAGCGATTCGGAAGATTTTACAGTCAAACAAGAAGTAGATTTGGACGGAATGCCGGAGAacattaaatacttaaaaattgaatgtgGCGCCGCACAAAAATATGTGAACGCGCGCACCGGCAAAAAACGATATAAGTGTTCGTACTGCGAGTACAGCACCGCGTACACGtctagtttaaaaaaacatatcaACATACACACTGGCATAAAACCGTTTAAGTGCTCACGGTGTAAATACAGTACTGcgattaaattcaatttgaaacaACACTTTTACACGCACACCGGCAACAAGCCGTTTAAGTGCTTGCATTGCGAGTACAGCACGGCGAtcaaatcgaattttaaaaagcacgTCAACATACACACCGACAAAAAACCGTTCCAGTGTTCGCAATGTGATTACAGCACGGCAAACAAACAATGTTTAAAACTGCACAGCTACACGCACAACGTCGAAAATCAATTTAAGTGCCCGTGCTGTGAGTACAGGACTCCGTATAAATGTAGTTTAAACCGACACGTACTCAAACACACCGGCGCGAAGCCGTTGCAGTGCACGCAGTGCGAGTACAGCACCGCaaataaatatcatttaaaacaacattacTACACGCACACCAGTAAGAAACCGTTCAAGTGCTCGCAGTGCGAGTACAGCACCGCGAACAAGCACAGCTTGAAACAACATACTTACACGCACGCCAGCGTGAAACGATTCAAGTGCTCGTACTGCGAGTACAGCACCGCGTACTCGTCCCACCTGAACACGCACGTTTCCAAACACACCGGCGAAAAGCCGTTCAAGTGTTTACACTGCACGTACAGTTCTGCGCAAAAGTCAACGTTGAAACTGCACATTTACACGCACGCCAACGAAAAACGATACAAGTGCTCGCACTGCGATTACGGCACGGCGAACTCGTCCCACTTGCGCGCTCACGTTTCCAAGCACACCGGCGAAAGACCGTTCAAGTGTTCACACTGCGAATACAGCGCTGCCCAAAAATCGACATTGAAACGACACGTTTGCACGCACGCCGGCGGCGCGAAGCCGTTCAAGTGCTCGCACTGCGAATACAGCACCGCGAataaatccaatttaaaacaGCACGCCTACACGCACACCAACGAGAAACTGTTCGAGTGTTCGCATTGCAAGTACGGCACTGCAAACAAATCGCACTTGAAAAAACACATTCGCACGCACACCGGCGAAAAACCGTTTAAGTGCTCGCACTGCGATTACAGGGCCGTGCAGAAATCGAATTTGAAACGGCACATTTGCACGCACACCGGCACGAAGCCGTTTAAGTGTTCGTTGTGCGATTTCACCGCCAcgcaaaaatcgaatttgaaACAGCACGTGCGCACGCACACGCGCAAGAAGCGATACGACTATTCGCACTGCGAGCGCGGCGCCGCGCAAAAATCCGGCGTGAAACAACGCGCACGCGCCGGCACGAAATCGTTCAAGTGCTCGCAGTGCGAGTATAGCACCGCTTACAAATCTAATTTAAGACAACACATTTACACGCACACCGACGAAAAACCGTTTCGGTGTTCACGCTGCGAATACAGCACCGGCAACAAATGTCACTTGGAAGAACATTTTCGCACGCACACCGGCGAAAAGCCGCTCAAGTGCTCGTATTGCGAGTACACTACCGCGCAAAACTCGAGCTTACGACGTCACATCCGCACGCATCCCGACATAAAGCCGTTCAAGTGCTCGCGGTGCGAGTACGGCGCCGCACGAAAATCGACTTTAAAAGAGCACATGTGCGCGCACGTGGACGAACGACCATTTAAGTGCTCGCACTGCGATTACCGCACCACGTACAAATCTCACTTGAAAAAGCACGTTCGCACGCACACCGGCGAAAAGCCGTTCAAGTGCCCGCACTGCGAGTACAGGGCCGCGCAGAAATCCACGTTGAATCAACACGTTTACAAGCATACCGGCGAAAAACTGTTCACGTGTCCGCACTGCGAGTACGGGTCCGTGCAAAAATCCGCTTTAAAACTTCACATCTACACGCACACCGGGGAGAAACCGTTCAAGTGCTCGCGGTGCGAGTACACGACCACAATAAAATTCAGTCTGAAACGACACGTCGAGACACATGCGGTTGTCGACGATAATTCCGTCTAA
Protein Sequence
MSEKVYSGHKGCKTRSTSAKRSKISNRRPPNRHSFEGDSEHVSTSAKKFKTTDLDRDRETVSSGKTIVDIATDVAVITFNDGLSGLFVVYDALGLTVGPNMYEFCMETDANRVKTAEHRMSDIAKEARRSIKSDKKEEEEKGPGRTIICCRDSRVKVRHYLNQPKVHHNLEIYKCFGGCSFAIPSSKMQYFCRTCFRQTSDSSSVPLDMDNHKHRLMSCIPEIDLRVLTDTRLCDDCVAALDRIYKFKIKCRAAEDEIHCRQFDVATERLTIKQEICSDNIGDRLTCRTCLIDIVDNDYLFSNQRPFYKSKLMRCVPEMDLRAARDIDLCKDCRVQLDSIYTFISNCQNVERNIEEYLRSHDIVDFGDLSVWCNALVKDDISDSEDFTVKQEVDLDGMPENIKYLKIECGAAQKYVNARTGKKRYKCSYCEYSTAYTSSLKKHINIHTGIKPFKCSRCKYSTAIKFNLKQHFYTHTGNKPFKCLHCEYSTAIKSNFKKHVNIHTDKKPFQCSQCDYSTANKQCLKLHSYTHNVENQFKCPCCEYRTPYKCSLNRHVLKHTGAKPLQCTQCEYSTANKYHLKQHYYTHTSKKPFKCSQCEYSTANKHSLKQHTYTHASVKRFKCSYCEYSTAYSSHLNTHVSKHTGEKPFKCLHCTYSSAQKSTLKLHIYTHANEKRYKCSHCDYGTANSSHLRAHVSKHTGERPFKCSHCEYSAAQKSTLKRHVCTHAGGAKPFKCSHCEYSTANKSNLKQHAYTHTNEKLFECSHCKYGTANKSHLKKHIRTHTGEKPFKCSHCDYRAVQKSNLKRHICTHTGTKPFKCSLCDFTATQKSNLKQHVRTHTRKKRYDYSHCERGAAQKSGVKQRARAGTKSFKCSQCEYSTAYKSNLRQHIYTHTDEKPFRCSRCEYSTGNKCHLEEHFRTHTGEKPLKCSYCEYTTAQNSSLRRHIRTHPDIKPFKCSRCEYGAARKSTLKEHMCAHVDERPFKCSHCDYRTTYKSHLKKHVRTHTGEKPFKCPHCEYRAAQKSTLNQHVYKHTGEKLFTCPHCEYGSVQKSALKLHIYTHTGEKPFKCSRCEYTTTIKFSLKRHVETHAVVDDNSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-