Rgig017803.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000057.1:225631-229246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.3 4e+02 2.6 5.5 2 23 157 178 156 178 0.94 2 16 1.8e-06 0.00016 22.7 3.1 1 23 183 205 183 205 0.98 3 16 8.8e-05 0.0082 17.3 3.8 1 23 211 233 211 233 0.97 4 16 5.1e-05 0.0047 18.1 1.2 1 22 239 260 239 260 0.95 5 16 0.00029 0.027 15.7 1.9 1 23 267 289 267 289 0.94 6 16 0.00048 0.045 15.0 0.5 1 23 450 472 450 472 0.96 7 16 7.1e-06 0.00066 20.8 5.6 1 23 478 500 478 500 0.98 8 16 1.5e-05 0.0014 19.8 7.7 1 23 506 528 506 528 0.98 9 16 1.8e-06 0.00017 22.6 2.5 1 23 534 557 534 557 0.97 10 16 0.0051 0.47 11.8 0.9 1 23 570 592 570 592 0.98 11 16 0.0013 0.12 13.6 4.4 1 23 598 620 598 620 0.97 12 16 2.1e-06 0.0002 22.4 0.5 1 23 627 649 627 649 0.96 13 16 4.3e-06 0.0004 21.5 1.0 1 23 655 677 655 677 0.98 14 16 4e-07 3.7e-05 24.7 0.9 3 23 685 705 683 705 0.96 15 16 2e-05 0.0018 19.4 0.1 1 23 711 733 711 733 0.99 16 16 0.038 3.6 9.0 2.3 1 23 738 761 738 761 0.97
Sequence Information
- Coding Sequence
- ATGGATAATGCTAAGTACGATTTTAACAAACTTTGTCGCGTCTGCAAACAGGAGGCTCCAGAAATGCAGCGTGTTTTTGTAAAAGATACAAATAGGGACGATTATCCCCGAATTGACGAGATGCTAATGGCATGCAGCGCAGTTATGGTGGTGCTTGGGGACGATTTACCAGACACTATCTGTCAAAAGTGTAACGAACAATTAATAAAGGCTTACGAATTTAAGCAACTCTGCGAAGATACCGATATGTGTTTACGCgactatttaaaacaaaaagatgCCGAAATTAAAAAGGAGGTGTCccaatataaaaacgaaaacgacgCAACCGACATGCCCAACAACACCGAGCAGTCTCGAGAAAACTTTGGGTCGCCTATAAAATCGGAGCCCGAAGATCAAGACGACAAGCAGTGTTCCGATAACTGtgattttatacaatttttggAAGATAATCAAGTGGTTTTAACTTGTCGGGCGTGCCTAAAATGTTTTACCACTTTGGACGGTTTGAAGTGTCATAAACGACTTCATACCGGAGGCCTTTTTAAGTGCAAAGAATGCGGCAAGCAGTACACAAGACCGAATCATTTACAAAGGCACGAGCTGTCTCACGGTCGTCGAAAAATGCACGTGTGTAAAATATGCAATAAAACTCTTACTAGGATCGAACATTTAAAACGGCACCTTGTCACACACCTGAAGGAGAAACCGTTCAGTTGTACAACTTGTAACCGTGGATTTAATAGATCAGAACACTTGGCCAATCATATTAAACGTTGCAAGGGCGACCGTGTACATATCTGTGATATTTGCAACAAGGGTTTTAATCGAGAAGATAGTCTAGAAGTGCACAAACATTTGCACGAGAACAAAGTACCTAATTTACCGACACTAGATAATTTGGATAATATAGACGAACATTATGTTGAAATTGATTTCGAGGAACCTAACCAGAACGACACGTTTTCCAATTCGGAGAGCGAACCAGAAGCCGAGGTCGATGGTAACATGAGCGACTGCTTGGAACCGCAAGTTAACATATCAGAAAACATGGATGCAGTGAAATTGATGGATATTGCAGAGATGGCTTctttagATAACGAGGTGTATGCCGAATTGGACTCTGAAGAATTATTAGAAGAAAAAAGTAACATAGAAAAGGAGTTTTACGGTAATGACCATAAAGACGGCGAATATATTTGCAAAGAAGAAAGGGACGACTCGGACAGCGGCCATTCGGAATATCTGCCGACCAAATcTGAGCGGTCGCCCCGAGGACGTCCCCCTCTCGGTAAAGTGAAAACCGAATTCTTGGACGAGAACAGTTTCGAAAATGAAGGGGAATATCCTTGTCCggtctgtaaaaaaatattcaacaaGATGAACATGCTCGAAAAGCATGCGTACAAACACGACGGCTTAAAGATACACACTTGCGGTATTTGTAGTAAGCAGTTTTCACGCAGCAATCATCTTAAAAGGCACATGCTATCGCATTCCGAACAGAAACCGTTTTCTTGCGAAATTTGtcacaaatgttttaataGACGAGATCACCTGATGCAACACATAAAGCTGCACTCGCGGCCGCAAGATTACGAGTGCGACATTTGCAAGAAGTCTTTCACCCAAGCGGTTCACTTGACCAAACATAAAGCAACcaaacataatatattacgTAAGAAAGTGATGGGCGAAAAGAAGTATCAGTGTACGGTTTGTCTTAAAGGGTTTACCACCGAGAAATATAGAGATGTGCACATGAAAGGCCATATGGGCGACAAGAAATATCAGTGCAGGACCTGCGATAAAACGTTCTTGTCGAAGTCTCATTTAACCGAGCATGCCAAGTTTCACAACGAGAATTGCAAGAAGTTCTTATGTTCGGAGTGCGGACAACGGTTTATTCGGAACGATTATCTTGTTATTCACATGAGAAGACACAGAGGGGAAAAGCCGTTTAAATGTCAGTATTGCGGGAAGGGTTTCCCGCGTACTACCGATCTTACAGTTCACGAGCGCTACCACACCGGTGAGAAAACCCACCTCTGTACAATTTGTGGAAGAGGTTTTGGGAGagCGTACAATTTAACAGTCCATATGCGCACCCACACGGGGGAAAAACCATATCAGTGTACTTATTGTGATGCCGCCTTTGCTCAGGGTAACGATCTGAAAGCTCACGTGCGCCGTCACACAGGAGAAAGGTTCCAGTGCGAGCACTGTACCGAAAGCTTTTTAATGGGTTACCTGCTAACCCAACACAAAAGAACTGTACACGGCTTAAACGTTGTTAGTAACATACGAAGGCTGCAACCTGTACATAAACAAAATCCAGATGACCCACCTCCCATCACCATTCCACTTCCCACCCCCGTAATTCCCTCgtcgatttttaattcgcaAATACAAGCCCAACTGGCTGTGGCACAACTCCACCAGCAAGTGACTCAGCCGTAG
- Protein Sequence
- MDNAKYDFNKLCRVCKQEAPEMQRVFVKDTNRDDYPRIDEMLMACSAVMVVLGDDLPDTICQKCNEQLIKAYEFKQLCEDTDMCLRDYLKQKDAEIKKEVSQYKNENDATDMPNNTEQSRENFGSPIKSEPEDQDDKQCSDNCDFIQFLEDNQVVLTCRACLKCFTTLDGLKCHKRLHTGGLFKCKECGKQYTRPNHLQRHELSHGRRKMHVCKICNKTLTRIEHLKRHLVTHLKEKPFSCTTCNRGFNRSEHLANHIKRCKGDRVHICDICNKGFNREDSLEVHKHLHENKVPNLPTLDNLDNIDEHYVEIDFEEPNQNDTFSNSESEPEAEVDGNMSDCLEPQVNISENMDAVKLMDIAEMASLDNEVYAELDSEELLEEKSNIEKEFYGNDHKDGEYICKEERDDSDSGHSEYLPTKSERSPRGRPPLGKVKTEFLDENSFENEGEYPCPVCKKIFNKMNMLEKHAYKHDGLKIHTCGICSKQFSRSNHLKRHMLSHSEQKPFSCEICHKCFNRRDHLMQHIKLHSRPQDYECDICKKSFTQAVHLTKHKATKHNILRKKVMGEKKYQCTVCLKGFTTEKYRDVHMKGHMGDKKYQCRTCDKTFLSKSHLTEHAKFHNENCKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCQYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCEHCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVHKQNPDDPPPITIPLPTPVIPSSIFNSQIQAQLAVAQLHQQVTQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -