Rgig008288.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000008.1:7126522-7128294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.023 2.2 9.7 0.1 6 23 2 19 1 19 0.94 2 21 0.00092 0.086 14.1 2.2 2 23 26 47 25 47 0.97 3 21 0.026 2.4 9.6 5.2 1 23 53 75 53 75 0.99 4 21 0.0071 0.66 11.3 0.7 2 23 82 103 81 103 0.97 5 21 5.2e-05 0.0049 18.1 1.5 1 23 109 131 109 131 0.98 6 21 0.0027 0.26 12.6 3.5 2 23 138 159 137 159 0.97 7 21 0.13 12 7.4 3.1 1 23 165 187 165 187 0.98 8 21 3.8e-05 0.0036 18.5 1.4 2 23 194 215 193 215 0.97 9 21 1.2e-05 0.0011 20.0 0.9 1 23 221 243 221 243 0.99 10 21 5.3e-05 0.0049 18.0 1.7 2 23 250 271 249 271 0.97 11 21 0.00022 0.021 16.1 3.1 1 23 277 299 277 299 0.99 12 21 0.00046 0.043 15.1 2.9 2 23 306 327 305 327 0.97 13 21 6.2e-05 0.0057 17.8 0.4 1 23 333 355 333 355 0.98 14 21 0.054 5 8.6 2.8 2 23 363 384 362 384 0.96 15 21 0.00028 0.026 15.7 2.9 1 23 390 412 390 412 0.98 16 21 0.00013 0.012 16.8 1.3 2 23 419 440 418 440 0.97 17 21 8.5e-05 0.008 17.4 0.5 1 23 446 468 446 468 0.98 18 21 0.047 4.4 8.8 6.1 1 23 475 497 475 497 0.98 19 21 0.00096 0.09 14.1 2.8 1 23 503 525 503 525 0.97 20 21 0.00044 0.041 15.1 1.3 2 23 532 553 531 553 0.97 21 21 3.3e-06 0.00031 21.8 1.2 1 23 559 581 559 581 0.99
Sequence Information
- Coding Sequence
- ATGTGCGAGTTCAGCACCGGAGATAAATCTAACTTGACGAGCCACATACGTGCACACACCGGCGAGAAACAACTGAAATGTTTACATTGCGATTATACGACTTCAAAAAAATACGGCCTGGTAAGCCATGTTCGCTCGCACACAAGCGAGAAACTTTTTAAGTGTTCCGAGTGCGGATTCAGTACTACGTATCGTTTTAAATTGGAATGCCACATTCGCAAGCATACCGACGAAAAACCATTGAAGTGTTTGCAGTGCGATTACACTACTTGGAGAAAATTTAGCCTTATAAACCATATTCGTGTGCACACCGGCGAAAAACCATTTACATGTTCGATGTGCGAATTCAGTACTGCACATAAATCTAATTTAGTAAACCACATTCGTGCGCACACCGGCGAGAAGCTATTGAAGTGTTTGCAGTGCGAGTACAGAAGTGCACACAGATATAACATGACTAGACATATTCGCAGACATACTGACGAGAAACCGTTTACATGTTTAATGTGCGAGTTCAGTACTACATGTAAATCTAGTTTGGTAACTCACGTTCGTATGCACACTGGTGagaaattattgaaatgttcGCAGTGCGATTACAAAAGTGCACAAAGATACAACATGGAGAGACATATACGTACGCATACCGGCGAAAAACCATTCAAGTGTTTACAGTGCAATTTCAGTAGCCCGGATAAGTCTAATTTGGTAAACCATATTCGCACACATACTAACGAAAAACCGTTGAAATGTTCGCAGTGCAACTACAGCACTTCGAGAAAATTTAGCCTGATAAACCATATTCGCTTACACACCGGCGAAAAACCATTTACGTGTTCAATGTGCGAATTCAGCACCGCACACAAATCCAGTTTTGTAAACCACATTCGCACACACACCGGCGAGAAGCTATTGAAGTGTTTACAGTGCGAGTACAGCAGTGCGCATAGATATAATATGACGAGACATATTCGCACGCATACCGGCgagaaaccatttaagtgtttgATGTGCGACTTCAACACGGCAGATAAATCTAATTTGGCAAGTCATATTCGCCTGCACACCGGCGAAAACCCATTATTGAAGTGTTTACAGTGCAACTACACCACTTCGAAACAAAACTGCCTGGTAAACCATGTTCTCTCGCACACCGGTgagaaaccatttaaatgttcgcaGTGCGACTTCCGTACTTCAAGACAATTTAGCCTGCTGAAACATGTTCGTTTGCACACTGGCGAGAAACCGTTGAAATGTTCTCAGTGCGAGTATAAAAGTGCGCAACGATACAACATGGAGAGACATATCCGCACGCATACCGGCGAAAAGCCGTTTAAGTGTTCGTTGTGCGACTTCAACACCGCAGATAAATCTAACTTGGCAAGTCACGTTCGCTTGCACACCGACGAAAAACCGTCATTTCAGTGTTTGCAGTGCAACTACAGcacttcgaaaaaaaattgccTCGTAAACCATATTCACTCGCACGCCGATAGGAAACCATTTAATTGTTCGCAGTGCGACTTCCGCACTTCGAGAAAATTTAGCCTCCTGAAGCATGTTCGTTTGCACACCGGCGAGAAATTATTGAAGTGTTCGCAGTGCGAGTACAAAAGCGCACAAAGATACAACATGGAGAGGCACGTTCGCACGCACACCGGCGAGAAGCCGTTCAAGTGTTCGTTGTGCGACTTCAACACCGCAGATAAATCTAACTTGACGAGTCACATTCGCACGCACACTAACGAAAAACCGATTAAATGTTCATAG
- Protein Sequence
- MCEFSTGDKSNLTSHIRAHTGEKQLKCLHCDYTTSKKYGLVSHVRSHTSEKLFKCSECGFSTTYRFKLECHIRKHTDEKPLKCLQCDYTTWRKFSLINHIRVHTGEKPFTCSMCEFSTAHKSNLVNHIRAHTGEKLLKCLQCEYRSAHRYNMTRHIRRHTDEKPFTCLMCEFSTTCKSSLVTHVRMHTGEKLLKCSQCDYKSAQRYNMERHIRTHTGEKPFKCLQCNFSSPDKSNLVNHIRTHTNEKPLKCSQCNYSTSRKFSLINHIRLHTGEKPFTCSMCEFSTAHKSSFVNHIRTHTGEKLLKCLQCEYSSAHRYNMTRHIRTHTGEKPFKCLMCDFNTADKSNLASHIRLHTGENPLLKCLQCNYTTSKQNCLVNHVLSHTGEKPFKCSQCDFRTSRQFSLLKHVRLHTGEKPLKCSQCEYKSAQRYNMERHIRTHTGEKPFKCSLCDFNTADKSNLASHVRLHTDEKPSFQCLQCNYSTSKKNCLVNHIHSHADRKPFNCSQCDFRTSRKFSLLKHVRLHTGEKLLKCSQCEYKSAQRYNMERHVRTHTGEKPFKCSLCDFNTADKSNLTSHIRTHTNEKPIKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -