Rgig011085.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000027.1:2258995-2262728[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.027 2.5 9.5 1.5 2 23 260 281 259 281 0.96
2 28 0.012 1.1 10.7 3.4 1 23 287 309 287 309 0.97
3 28 4.5e-05 0.0042 18.3 1.0 1 23 315 337 315 337 0.99
4 28 0.029 2.7 9.4 6.0 1 23 343 365 343 365 0.99
5 28 0.00026 0.024 15.9 1.6 2 23 372 393 371 393 0.97
6 28 0.0019 0.18 13.1 1.3 1 23 424 446 424 446 0.99
7 28 9.1e-05 0.0085 17.3 2.3 1 23 452 474 452 474 0.98
8 28 0.00029 0.027 15.7 3.9 1 23 480 502 480 502 0.98
9 28 0.018 1.7 10.1 1.1 2 23 509 530 508 530 0.97
10 28 0.00035 0.033 15.4 0.3 1 23 536 558 536 558 0.97
11 28 0.049 4.6 8.7 0.6 11 23 584 596 576 596 0.87
12 28 0.00052 0.049 14.9 1.2 2 23 603 625 602 625 0.90
13 28 0.0023 0.21 12.9 2.8 1 23 631 653 631 653 0.97
14 28 6.6e-05 0.0062 17.7 0.3 1 23 659 681 659 681 0.99
15 28 4.9e-05 0.0046 18.1 0.6 1 23 687 709 687 709 0.98
16 28 0.036 3.4 9.1 2.4 2 23 716 738 715 738 0.92
17 28 0.0035 0.33 12.3 1.9 3 23 746 766 744 766 0.97
18 28 0.00072 0.067 14.5 0.8 1 23 772 794 772 794 0.98
19 28 0.0003 0.028 15.7 2.3 1 23 831 853 831 853 0.99
20 28 0.082 7.7 8.0 2.8 1 23 859 881 859 881 0.98
21 28 0.00026 0.024 15.9 0.4 1 23 887 909 887 909 0.98
22 28 0.044 4.1 8.9 1.0 2 23 916 938 915 938 0.95
23 28 0.0028 0.26 12.6 2.7 1 23 946 968 946 968 0.97
24 28 0.00033 0.031 15.5 1.2 1 23 974 996 974 996 0.99
25 28 0.00048 0.045 15.0 0.6 1 23 1002 1024 1002 1024 0.98
26 28 0.0063 0.59 11.5 4.4 2 20 1031 1049 1030 1052 0.94
27 28 0.0009 0.084 14.2 4.5 1 23 1058 1080 1058 1080 0.97
28 28 1.3 1.3e+02 4.2 0.4 1 17 1086 1102 1086 1103 0.93

Sequence Information

Coding Sequence
ATGAAGACCGTTTGCAGAACGTGCATTAAAGAAGTAACCTACACCACGTCCGCATCTTCGGGCTTGGAAATTTACCACTACAAACTGATCCAATGCGTCCCAGAAATCAACCTACGCGTTTTGCCCGATGCGAGGATGTGCGACGAGTGCACGGAAGCGCTCGACGTGACctacaaattcaaaattcagtGTCTAGAAGTCGAGGACAAAATTAATAGCCATTTCGAGCGACACGGTTTCGTCGACCTTCCGAGCCTATCGCGATTTTCTCCCGCAATCGACAAAAGCGAATTGGAACCGGAGGAGTTTACAATTAAACGAGAGATCGATTCGGACGACGTCATTTGCAGGACTTGTCTTCGACGTATTACAGATATAAATTAcgatttgttttgtaaaagtaaattgatattttgtaTTCCAGAAGTGGATACGCGAGCCGTGCCCGATATCATGTTCTGCAAGGATTGTTATGCGGCCATCGACGTGGCttactattttaaaacgaagtGCAGGGAAGTCGAGGGAAATCTGACTGACTTATTTGATTGGTTTAATGTAACGATTAAAAACGAGGCGACGGTCAAATTGGAAGAGGTAACAATTAAACAGGAAGAAATCGATCTGGACGATGCTTGCGCAACGGTGGACTGTACAAACGAGGGCTGGGTAACGGCGTTTGAAGATTCTTGCGATTGTCAAGGGAAGACGCGACATTGTCAAAAATGTCTGGCCAATATCGAACGACGTATTTTCGAGAACACGTGCAGGAAAATCAAATGCCTTTGGTGTAATTATAAAACCGATAATAAATTCAACATGAAAAAGCACCTCCTGTTGCACGCCAACGAGAAGTCGTTTAAGTGTTTACATTGCGATTTTAGTACGGTGAACAAGGAGCGCCTGAAGAACCATCTTTTTGTGCATGCCGACGAAAAGCCGTATAAATGTTCGTTGTGCGACTACGGCACCGTAAATAAGACGGATTTGAAAACGCACGTTCGCACGCACACCggcgaaaaaccatttaaatgtaacGAGTGCGATTATAGGTGCGCGTGCAGTACAACCTTGAAAGGTCACATGCGCACTCATACCGGCGAGAAACCGCTAAAATGTTCGGAATGCGATTACAGAACCGGCAGTAGGACGAACATGAAAAGACACATTCGTTCTCACATCAACAAGCAATGTCTGTATTCAGATTTGAGTGCGATAACTAAgatgtatttgaaaaattatccGCTCGCACGCACCAACGAgaaacgatttaaatgtttGCAGTGCAAGTACGGGACCAAAAATAAGGCGGACTTCGTGAAACACGTGCGCGTACATACCGGGGAAAAACCGTTTAAATGCACCGAATGCAAATATAGCAGCGCGAACACGGAAAACCTGAAAAGGCACATGTTCTCGCACAGCGGCGAAAAACGATTCCAATGCACCAAGTGCGATTATAAGTGCGCATTTATGGGCAACTTGAAAAGGCACATGCTTTCGCATACCGGCGAGAAACCGTTGAAATGTTCGGAATGCGAGTACAGGACCGGAAGTAGCACGAGCATGAAAAGGCACGTTCAGTCGCACACTGAGAAAAAGCCGTTTAAGTGTCCGTATTGCGGCTTTACCACGGTAGCCCAGATGTACTTAACGAACCACATGCTTGCGCACACCaatgaaaaatcgaaagtAAATCAAGAACCTAATTGCAAGAGGAAAATACTGACGTGCTCGCAATGCGATAGCGCAAACAAGGAGAACCTGAAGAGGCACATGCGTTCTCATAGCGGCGAGAAGCCACTAAAATGTCCGGATTGCGGGTACAGGAGCACGTTTAGCTCCAACATGAAACGACACACAACCGACTACCATCGAAGCGATAAATCCTTCAAATGTCTATATTGCGATTTTAACACGAGGTACAAGCCGAACTTGAAAAAGCACCTATTCGTGCACACCGACGAGAAGCCGTTTAAATGTTTAGAATGCGGGTACGGAACTAAGAGCAAGGCGGACATGATAAAACACATCCGCGTGCATACCGGGGAAAAGCCGTTCGAATGTACCGAGTGCGATTATAGGAGCGCAAACATGGAGAACCTGAAAAGACACGTGCGCTCGCACAACGCCGAGGAACTGATAAAATGTTCGGAATGCGAGTATAAAAGTGCTTTTCATTCGAACATGAAACGACACATGACCGACTATCATAATACCGAGAAACCGTTCGGATGTCTGCATTGCGACTTTAGCACAAGGTACAAGGCGAACTTGAAGTCGCACCTGTTAATACACGCCAAGAAAAAACCATTTGAATGTTTGCAGTGCGAGTACGGAACTAAGAGCGAGACGGAATTGAAAAGGCACGTTCGTACGCACATAAAATGCGAGAGCGAAAGCGCGGAGGACGTGCTTTTCGTACCGACGATGAATTGTCGAAATGCATACTTAGTGCGACATCTGTTTGTGCACACCAGCGAAAAACCGTTTAAATGTTCGCATTGTCACTACGGGGCCGCAACCAAGGCAAGTTTGGAAAGACACGTCCGCGTGCATACCGGCGAGAAGCCGTTTAAATGCACGGAATGCGACTACAGCAGCACGTGCATGGGAAACATAAGCAGACACATGCGTTTACATACCGGCGAGAAACCGTTCCAATGCACCGAATGCGAATATAGAGGCGCAAATATCGGGAACTTGAAAAAGCACATGCTTCGTCATACCGGCGAGAAGCCGTTGAAATGTTCACTGTGCGATTATAAAACTGGTGATAGCTGGAGTATGAAAAGGCACACCGACACGAAACACTCGTTTTGCGACGAAAGACCGTTTAAGTGTTCGCATTGCGACTTTAGCACGACGGCTAAGGCGTACCTGGAGAAGCATCTGTTCGTGCACTCCGacgaaaaaccatttaaatgtacCCATTGCGAGTACGGGACTACGAGCAACGCATCTTTGGAAATGCACGTTCGCATACATACCGGGGAGAAACCGTTCAAATGCACCGAATGCGAATATAGGAGTGCGACCATGGGGAACCTAAAAAGGCACGTACTGTCTCATAccgaaaataaattgttaaaatgtacGGAATGCGACTATAGCAGCACGAATAGCATAAGCTTGAAACGACACATGCACTGCCACATCAGCGACAAACCGTTTAAATGCACGGAGTGCGATTATAGCACGGTGACCAAGACGTGCCTGAAGAAACATTTGTTTGTACACAGCAAAGAGAAACCGTTTAAATGTTCGTTGTGCGAGTACGGGACCGCGAACAAAACAGATTTGAAAAACACGTTCGCACCCACACCGGCGAAAAACCGTATCGATGCACCGAATGCGAGTACAGTAGTGCGTGCAAAGAAAACTTGA
Protein Sequence
MKTVCRTCIKEVTYTTSASSGLEIYHYKLIQCVPEINLRVLPDARMCDECTEALDVTYKFKIQCLEVEDKINSHFERHGFVDLPSLSRFSPAIDKSELEPEEFTIKREIDSDDVICRTCLRRITDINYDLFCKSKLIFCIPEVDTRAVPDIMFCKDCYAAIDVAYYFKTKCREVEGNLTDLFDWFNVTIKNEATVKLEEVTIKQEEIDLDDACATVDCTNEGWVTAFEDSCDCQGKTRHCQKCLANIERRIFENTCRKIKCLWCNYKTDNKFNMKKHLLLHANEKSFKCLHCDFSTVNKERLKNHLFVHADEKPYKCSLCDYGTVNKTDLKTHVRTHTGEKPFKCNECDYRCACSTTLKGHMRTHTGEKPLKCSECDYRTGSRTNMKRHIRSHINKQCLYSDLSAITKMYLKNYPLARTNEKRFKCLQCKYGTKNKADFVKHVRVHTGEKPFKCTECKYSSANTENLKRHMFSHSGEKRFQCTKCDYKCAFMGNLKRHMLSHTGEKPLKCSECEYRTGSSTSMKRHVQSHTEKKPFKCPYCGFTTVAQMYLTNHMLAHTNEKSKVNQEPNCKRKILTCSQCDSANKENLKRHMRSHSGEKPLKCPDCGYRSTFSSNMKRHTTDYHRSDKSFKCLYCDFNTRYKPNLKKHLFVHTDEKPFKCLECGYGTKSKADMIKHIRVHTGEKPFECTECDYRSANMENLKRHVRSHNAEELIKCSECEYKSAFHSNMKRHMTDYHNTEKPFGCLHCDFSTRYKANLKSHLLIHAKKKPFECLQCEYGTKSETELKRHVRTHIKCESESAEDVLFVPTMNCRNAYLVRHLFVHTSEKPFKCSHCHYGAATKASLERHVRVHTGEKPFKCTECDYSSTCMGNISRHMRLHTGEKPFQCTECEYRGANIGNLKKHMLRHTGEKPLKCSLCDYKTGDSWSMKRHTDTKHSFCDERPFKCSHCDFSTTAKAYLEKHLFVHSDEKPFKCTHCEYGTTSNASLEMHVRIHTGEKPFKCTECEYRSATMGNLKRHVLSHTENKLLKCTECDYSSTNSISLKRHMHCHISDKPFKCTECDYSTVTKTCLKKHLFVHSKEKPFKCSLCEYGTANKTDLKNTFAPTPAKNRIDAPNASTVVRAKKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-