Rgig001157.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000001.1:10285686-10289785[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.3e-05 0.0012 20.0 2.7 1 23 147 169 147 169 0.99
2 14 0.0019 0.18 13.1 6.1 2 23 176 197 176 197 0.97
3 14 5.4e-05 0.005 18.0 3.0 1 23 207 229 207 229 0.96
4 14 5.3e-05 0.0049 18.0 2.6 2 23 301 323 300 323 0.97
5 14 0.00039 0.037 15.3 6.0 1 23 392 414 392 414 0.95
6 14 3.8e-05 0.0035 18.5 1.1 1 23 420 443 420 443 0.95
7 14 2.7e-06 0.00025 22.1 0.8 1 23 448 470 448 470 0.98
8 14 1.9e-07 1.8e-05 25.7 2.5 2 23 480 501 479 501 0.97
9 14 8.3e-08 7.8e-06 26.9 1.4 1 23 508 530 508 530 0.97
10 14 2.7e-05 0.0025 19.0 1.6 3 23 542 562 540 562 0.92
11 14 6.1e-05 0.0057 17.8 4.4 1 23 568 590 568 590 0.99
12 14 1.1e-05 0.001 20.2 1.8 1 23 596 618 596 618 0.96
13 14 6.7e-08 6.2e-06 27.2 0.2 1 23 624 646 624 646 0.99
14 14 0.00043 0.04 15.2 0.1 1 23 652 676 652 676 0.92

Sequence Information

Coding Sequence
ATGATTAATAAAGAAACCTTATTAGTTATGCAAAAGGTATGTCGGTCATGCATGCGCGAGGGTGCCGAAATGCGGAACGTATTCGAAACGAAAAATGTTGAGGAGGGACAAACACTTCAACTTGCAGAGATGTTGATGGCTTGCACGTCTGTACAGATAACCTCAGGCGATGGACTTCCAATGCAGTTGTGTTTTACGTGCGAAACCAAATTAGACTCTGCATtcgaatttaaacaaaagtgCGAAAAATCGGATAGAACTTTACGAGAATTGACAAATCAAACTGCCTCTAAACGATCCATAAAGCAGGAATCGTTAGATATTTTAGTACAACCCGATATAGAGGCCACCGAATTTTATAACGACGAAGCCGATGATTCGGACAGTGCGGAATCCGTAAATTCGAAACAGACGGGCAAATCTAAGGAATCGAGCGCGTTTACGTGCAGCTATTGCCAAAAAGTACTGCGCACAAAAAAGGGACTGAAAATTCATCAGCGAAGACATACCGGAGAGAAATTGCGCTCTTGCCATTTATGTCAAGCAAAATTTACAAGGACGAATCATTTAAGAAGGCACCTGGAAACGCACAACAAGTCCAACGATGATTTGTCGATACATATTTGCACAGAGTGCGGAACTACATTTGCCAAAGCGTACCATCTGGTTAAACACAGAAAGGAGCACAAgatggaaaattttaaggtgAAAAAGGAGGAGGAATGTGATAATTTCGAGGGCGGTTTTGCGGAAACGGAATGTTTATCCGAAGACAAGAATAATACGAATAACGCATGTAATGCAAACCTAATTAAAGATAATGAGTGTGGCGTGGATGCAGATGCCGATTTCGATCAGaaagaaaacgataaaagCGTAGAAAAAGAGAAAAAGGTGATGGAGTGCGAGTTTTGTGATCGCGTATTTAAATATCGTAAGAGTTTCATACATCACATGCAAACCGAGCACGGAATGTCGGACGAAAGCGACGTTCCTCTGAGCACCTACGTCACAAAAGTTGAGTCCGTTAAGTTTGAAACAGTAGATAAGCTGGCTGCAGCTGCCAACTGTACCGATACCAAAGATTATGCAAACCCGGATAATTCGGATGATGCGATTGACGGATCGATTGTCGTTGACGAAAAATTTTTGGTCCTCGACTCCCGTAAATTTCACGATTGTCATGTGTGTCAAGCAAAATTCACCCGTGCCAACCATTTAACTAGACATATGACACTCCACAGGGCAGTACTTATACATAAATGTGATCGTTGTGATAAAGCTTTTGCTACACCCgaatatttaagtaaacacACCCAAGAAGATCATATTAACAAACCTTACGTTTGTACGATGTGCGATAGGCCTTTCAGTCGGGGCGAACACTTAATTCGACATCTAAAAATACACGACAATATCGGacaagacgaaaatttaaagtgttCCATCTGCGACAAGACTTTTAGCAGATCGGACCATTTAGCGAGGCACACCAAAATTCACTTGCAACACGACAAGAGACACGTGTGTTCCGAATGCGGGAAGGCGTTCAATAGGCTCGATAACTTAAAAACTCATCAGCGCATTCACACCGGTCTCAAAGACAATTCCAGACTGCACCTTTGTATTTATTGCGGCaaggaatttaataattcgagCAATATGATTGTTCATATGAGAAGGCATACGGGCGAAAGGCCGTACAAGTGCACTATATGTGGCAAAGGGTTTCCCCGATCGCACGATTTAAAATGCCACGAACGAACACATTCAGGCGAGAAACCGTACCTGTGCACGTTGTGCGGaaaatcgtttaataaaagcaacaaattgtTACGTCACACAAGAGTTCATACCGGCGAAAGACCGTACGTCTGCAACATATGTGGAAGAGCCTTCACGCAATCGAACGACCTGGCCCTGCACATGCGCAGACATACGGGCTCGCGTCCGTACGCCTGTGGCGTTTGTTCGGCTCGGTTTATTCAATCGGGTCAACTAAAAGCACACCGACGTTCCACGGGTCATTGGATGGAGACGCAACCCGATCTCAAGGGCGGCCATAGGGTAGAGCCGGTCACTCCGATAATGAATCCCGCTcccattaaatttaaaactcacGGCAAAACTCTACTGAAACTAAAGGAGGACATTATCGAGAAAAAGGAACCTCGCATCCTAAGCCAAACTGTCGGCATTATgggaaatattaatatacaaaatGACAATCCTAATCATTCGCAACCGATAATAATTGATAGTACAAAATTACTTCAACAGTTCCACAATGCTGGTTTTGTCGGATTTACGACAGTTATTAATGCAACATCTCAGGTGGCAAACGACGACGATAACAATATGGAGAtagaaaattgtaatataaacaatttagtcaAAGAAAGGACTTCGGCCCAAGACAATAGTAAAATTGAGATTATACACGACGGCGTTACATATTCAACAGTAACTTCTGCCCCAACATTTGCCGCAAGTAcggaaaattataatttccaaACTTTTGGATAA
Protein Sequence
MINKETLLVMQKVCRSCMREGAEMRNVFETKNVEEGQTLQLAEMLMACTSVQITSGDGLPMQLCFTCETKLDSAFEFKQKCEKSDRTLRELTNQTASKRSIKQESLDILVQPDIEATEFYNDEADDSDSAESVNSKQTGKSKESSAFTCSYCQKVLRTKKGLKIHQRRHTGEKLRSCHLCQAKFTRTNHLRRHLETHNKSNDDLSIHICTECGTTFAKAYHLVKHRKEHKMENFKVKKEEECDNFEGGFAETECLSEDKNNTNNACNANLIKDNECGVDADADFDQKENDKSVEKEKKVMECEFCDRVFKYRKSFIHHMQTEHGMSDESDVPLSTYVTKVESVKFETVDKLAAAANCTDTKDYANPDNSDDAIDGSIVVDEKFLVLDSRKFHDCHVCQAKFTRANHLTRHMTLHRAVLIHKCDRCDKAFATPEYLSKHTQEDHINKPYVCTMCDRPFSRGEHLIRHLKIHDNIGQDENLKCSICDKTFSRSDHLARHTKIHLQHDKRHVCSECGKAFNRLDNLKTHQRIHTGLKDNSRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTICGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGSRPYACGVCSARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPIMNPAPIKFKTHGKTLLKLKEDIIEKKEPRILSQTVGIMGNINIQNDNPNHSQPIIIDSTKLLQQFHNAGFVGFTTVINATSQVANDDDNNMEIENCNINNLVKERTSAQDNSKIEIIHDGVTYSTVTSAPTFAASTENYNFQTFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-