Rgig002807.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000001.1:26849376-26851856[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0055 0.52 11.7 0.2 2 23 205 226 204 226 0.96
2 17 0.038 3.6 9.0 0.7 1 23 268 290 268 290 0.97
3 17 6.1e-07 5.7e-05 24.1 1.5 1 23 296 318 296 318 0.99
4 17 1.1e-05 0.0011 20.1 0.3 1 23 324 346 324 346 0.99
5 17 1.3e-05 0.0012 19.9 0.3 1 23 352 374 352 374 0.99
6 17 8.8e-06 0.00083 20.5 1.1 1 23 380 402 380 402 0.99
7 17 0.00018 0.017 16.3 0.2 1 23 408 430 408 430 0.99
8 17 7.3e-07 6.8e-05 23.9 1.8 1 23 436 458 436 458 0.99
9 17 2.5e-05 0.0024 19.0 2.0 1 23 464 486 464 486 0.98
10 17 9.4e-07 8.7e-05 23.5 0.2 1 23 492 514 492 514 0.99
11 17 9e-06 0.00084 20.5 0.5 1 23 520 542 520 542 0.98
12 17 5.4e-06 0.0005 21.2 3.4 1 23 548 570 548 570 0.99
13 17 2.1e-05 0.0019 19.3 0.2 1 23 576 598 576 598 0.99
14 17 0.00057 0.053 14.8 3.0 1 23 613 635 604 635 0.99
15 17 7.2e-06 0.00067 20.8 3.8 1 23 641 663 641 663 0.99
16 17 0.093 8.7 7.8 0.2 10 23 675 688 673 688 0.92
17 17 0.0014 0.13 13.6 3.8 1 23 694 716 694 716 0.99

Sequence Information

Coding Sequence
ATGGAAATAAATTCGTACGAAAACATATCGGAAGTATGCAGAACCTGTCTACAGCAGATCATGCACGGCtctaaggttttttatttagattcgATTGAATCTAACATTGAacaaacaacaattaaaaataaattgagaGATTGCATACCCGAACTGgatttaaatataacaccAAACGCGGCAATCTGTAGCGAATGTACGGATGCAGTTAATCTTGCtcacaaatttaaaaagaaatgccttcaaactgaagaaaatataCACAATTACGTCCAGAATATGGGTTACGTATCTATGTACGTAGACTTAATGCATCTTGTGCAACAAAATAAACAGCAAGCCGATAACGAACACGTCGACATTAAGCCCATCGTACATATAAAACAAGAAGCTCCCAATTACGAGGAATTTCCGACAACTCCATCCTACCCTGATGTAAATTCTATTAAAGAAGAATGTATCTATCCCAATTACGAACCCGAAGTTCAATTTGATTCTTCTTATATAGATCTTGAACAACCACCTCCACAAGAAATGGAACATAAggatatcaaaatttcaaaagtagAAACGATTCTTGGCAACTCCGACAAAGAAAACGATTTTCCATGGATATGTAATAATTGTAGCTACAATGCTAGCAGCGAATCCGATTTAATGCTCCATTTGAAAACGCACGTCACCACAGTAATAGACACACAACAAACAGAAGTtgacaaaaagaaaataactaCGGATTACAAAACCGATGACATTTTCAATCCACAGAAATATATGCGAACCTTATTTGGAAAGCACACGTACGAATGCAAGGTGTGCGGCTACAAAACGGCCTTAAAACGCAGACTGGTACTTCATACAAAACTGCACGAAGAAAATCGGCTGTATAAGTGCACGGAATGCGAGTACGTGTGTGCACAACGAAGCAACTTAAACGTACACATGAGGATCCACACAGGCGACAAACCCTACAAATGTAATCAATGTGATTACAGCACGGTATCAAATTCTGCTTTAATTGTACACACAAGAATACATACAGGAGAAAAACCATATACATGTAACGTTTGTGGCTATAACACTATATCGAAATCTGCTTTAACCGTTCATACCAGAATTCATACTGGTAGCAAGCCTTACAGATGCACCGTATGTGCTTATCGTACCGTTACTAAATCCTCGCTAACGGTACATATGAGAACACATACAGGTGATAGGCCTTATAAATGCAATCTCTGTGCTTACAGCACAACAGCGAAATCTGCTCTAAATGTACATATAAGAATCCACGAAGGATATAAACCATTTCAGTGCCCAGAATGCAATTACCGTTGTACCCAGAGAAGCGGCTTGAACGTACACATGCGTGTTCACTCTGGCGATAAGCCGTATCATTGCGAGGAGTGCGAATACAAAAGTAGTAACAGGAGTAGTTTGGTCGTGCATATGAGGACTCATACTGGCGAAACTCCATACAAGTGTGGAGAGTGTGATTATAGCACGGCCTCAAAATCTGCCTTAAATGTACATATGCGAATTCATGGAGATAATAAGCCGTATATTTGCGTGGAATGCGGATATAAATGTGCACAGAGAAGTGGCTTAAATGTTCATATGAGAATTCATACGGGAGATAAGCCTTACAAGTGCAACGAATGCGACTACCGATGCAGTTATCAGGGCAACTTAAAAGTGCACAGGAGAGTGCATACGGGAGAGACGCCGTTCAAATGTTTCGTTTGCGGATATAGTACTACGGCCAAGTCTGCCTTGGTCGTTCACATGCGGATACACACAGGAGAGAAACCATACAAATGTACAGAGTGCGAAACACCGTACGAGTGCAGTGTCTGCGATTATAGGACAACCGCAAATTCTGCTCTTGTTGTTCATATGAGAATACATACAGGGGAGAAGCCGTACAAATGTACAGAGTGTCCATATAAATGTAGCAATAAAAGCAGTTTGAAAGTTCACACGAGAATACACAGGAGAGACTCCATTCAAATGTGGAGTGTGCGATGCAATAATAAGAGTAGTTTAAAAGTTCATATGAAAGTGCATAGTGGTCGAACACCGTATAAGTGCGAAATTTGTTCCTACACTTGCAAAAaaggttttgttttaaaaagacaCATGAGGGTTCACGTCGAAGAGGAGGCAACAGAAGAAATTGAAGAAATCTTAGAAGGCGTAGAAGAACCTATCGTGGAAATCAGAGATGACCTAGGCGACGAGCCGATTATAGAAACTGTAGATGAAGTTATAACTATCGAGTAA
Protein Sequence
MEINSYENISEVCRTCLQQIMHGSKVFYLDSIESNIEQTTIKNKLRDCIPELDLNITPNAAICSECTDAVNLAHKFKKKCLQTEENIHNYVQNMGYVSMYVDLMHLVQQNKQQADNEHVDIKPIVHIKQEAPNYEEFPTTPSYPDVNSIKEECIYPNYEPEVQFDSSYIDLEQPPPQEMEHKDIKISKVETILGNSDKENDFPWICNNCSYNASSESDLMLHLKTHVTTVIDTQQTEVDKKKITTDYKTDDIFNPQKYMRTLFGKHTYECKVCGYKTALKRRLVLHTKLHEENRLYKCTECEYVCAQRSNLNVHMRIHTGDKPYKCNQCDYSTVSNSALIVHTRIHTGEKPYTCNVCGYNTISKSALTVHTRIHTGSKPYRCTVCAYRTVTKSSLTVHMRTHTGDRPYKCNLCAYSTTAKSALNVHIRIHEGYKPFQCPECNYRCTQRSGLNVHMRVHSGDKPYHCEECEYKSSNRSSLVVHMRTHTGETPYKCGECDYSTASKSALNVHMRIHGDNKPYICVECGYKCAQRSGLNVHMRIHTGDKPYKCNECDYRCSYQGNLKVHRRVHTGETPFKCFVCGYSTTAKSALVVHMRIHTGEKPYKCTECETPYECSVCDYRTTANSALVVHMRIHTGEKPYKCTECPYKCSNKSSLKVHTRIHRRDSIQMWSVRCNNKSSLKVHMKVHSGRTPYKCEICSYTCKKGFVLKRHMRVHVEEEATEEIEEILEGVEEPIVEIRDDLGDEPIIETVDEVITIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-