Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: -
Assembly: GCA_036326145.1
Location: JARFJA010000019.1:4712187-4720475[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.16 15 7.1 0.1 2 23 106 127 105 127 0.94

2 27 0.00021 0.019 16.2 1.4 1 23 148 171 148 171 0.95

3 27 0.0021 0.2 13.0 2.7 1 23 176 199 176 199 0.89

4 27 1.9 1.8e+02 3.7 0.3 1 23 205 227 205 227 0.91

5 27 0.00077 0.072 14.4 0.5 1 23 233 255 233 255 0.97

6 27 8.1e-05 0.0076 17.5 1.6 1 23 261 284 261 284 0.97

7 27 0.0002 0.019 16.2 2.5 2 23 296 317 295 317 0.98

8 27 6.1e-05 0.0057 17.8 1.5 3 23 325 345 324 345 0.99

9 27 1.2e-06 0.00011 23.2 0.8 1 23 351 373 351 373 0.97

10 27 5.4e-06 0.0005 21.2 2.4 1 23 379 401 379 401 0.97

11 27 0.045 4.2 8.8 0.1 1 21 407 427 407 428 0.90

12 27 1.4e-06 0.00013 23.0 1.3 2 23 589 610 588 610 0.97

13 27 0.008 0.74 11.2 4.0 1 23 615 638 615 638 0.94

14 27 0.0015 0.14 13.4 4.8 1 21 649 669 649 671 0.95

15 27 0.0035 0.32 12.3 1.4 3 23 679 699 678 699 0.99

16 27 0.00016 0.015 16.5 5.0 1 23 705 727 705 727 0.97

17 27 0.00039 0.037 15.3 5.2 1 20 733 752 733 755 0.93

18 27 0.011 1 10.7 3.0 2 23 784 805 783 805 0.96

19 27 0.00032 0.03 15.6 1.8 1 23 810 833 810 833 0.96

20 27 0.0017 0.16 13.3 0.8 1 23 839 861 839 861 0.96

21 27 0.0012 0.11 13.7 0.7 1 23 867 890 867 890 0.96

22 27 0.00022 0.021 16.1 3.5 1 23 895 917 895 917 0.97

23 27 0.00027 0.025 15.8 3.1 2 23 926 947 925 947 0.96

24 27 0.00036 0.034 15.4 1.3 1 23 954 976 954 976 0.97

25 27 0.00054 0.05 14.9 4.5 3 23 984 1004 982 1004 0.98

26 27 6.2e-05 0.0058 17.8 3.3 1 23 1010 1032 1010 1032 0.97

27 27 0.041 3.9 8.9 4.8 1 23 1038 1060 1038 1060 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.16	15	7.1	0.1	2	23	106	127	105	127	0.94
2	27	0.00021	0.019	16.2	1.4	1	23	148	171	148	171	0.95
3	27	0.0021	0.2	13.0	2.7	1	23	176	199	176	199	0.89
4	27	1.9	1.8e+02	3.7	0.3	1	23	205	227	205	227	0.91
5	27	0.00077	0.072	14.4	0.5	1	23	233	255	233	255	0.97
6	27	8.1e-05	0.0076	17.5	1.6	1	23	261	284	261	284	0.97
7	27	0.0002	0.019	16.2	2.5	2	23	296	317	295	317	0.98
8	27	6.1e-05	0.0057	17.8	1.5	3	23	325	345	324	345	0.99
9	27	1.2e-06	0.00011	23.2	0.8	1	23	351	373	351	373	0.97
10	27	5.4e-06	0.0005	21.2	2.4	1	23	379	401	379	401	0.97
11	27	0.045	4.2	8.8	0.1	1	21	407	427	407	428	0.90
12	27	1.4e-06	0.00013	23.0	1.3	2	23	589	610	588	610	0.97
13	27	0.008	0.74	11.2	4.0	1	23	615	638	615	638	0.94
14	27	0.0015	0.14	13.4	4.8	1	21	649	669	649	671	0.95
15	27	0.0035	0.32	12.3	1.4	3	23	679	699	678	699	0.99
16	27	0.00016	0.015	16.5	5.0	1	23	705	727	705	727	0.97
17	27	0.00039	0.037	15.3	5.2	1	20	733	752	733	755	0.93
18	27	0.011	1	10.7	3.0	2	23	784	805	783	805	0.96
19	27	0.00032	0.03	15.6	1.8	1	23	810	833	810	833	0.96
20	27	0.0017	0.16	13.3	0.8	1	23	839	861	839	861	0.96
21	27	0.0012	0.11	13.7	0.7	1	23	867	890	867	890	0.96
22	27	0.00022	0.021	16.1	3.5	1	23	895	917	895	917	0.97
23	27	0.00027	0.025	15.8	3.1	2	23	926	947	925	947	0.96
24	27	0.00036	0.034	15.4	1.3	1	23	954	976	954	976	0.97
25	27	0.00054	0.05	14.9	4.5	3	23	984	1004	982	1004	0.98
26	27	6.2e-05	0.0058	17.8	3.3	1	23	1010	1032	1010	1032	0.97
27	27	0.041	3.9	8.9	4.8	1	23	1038	1060	1038	1060	0.98

Sequence Information

Coding Sequence: ATGAACGAAGTTGTGACACGCAAGAGGTCTTTACTCGCGAGCAAAGAAAACTGGTCGGATAGATTACCGGAGATCGATATAATTCCGGTTCTAAGGGAAGGCGATAAAGGTTACACGTTGCccgattttaaaatgatcaCTTGCAAAATGGAGATGTTAGACGACGACAACGAGAAACCGACAAAGAGAGCGTCCAAAAAGGGCAAACGTGGCGCATCGGATGCGGGCTACAAAAATCCCTTCGTGTACACCAATCTCGATCATTCGAAGAAAGGTCGGGAGAGTAAACAAACCGGTGCCAACGTCACCAAGTGGGTTTGCATGATATGCAACGAAGCGACCAAAGGCAAACAGAGCCTCATCGACCACTACGAGCAACACAAAAACGAAAAGGAGATCAACGCCGATCAACCGAAAGCCAAAAACAACATCGAGGACTATTTCAAATGCGTAATATGCAATCGAGAATTTACTTCGTCGAGAAGCTACGAAAAACATCTCGAGCTCAAGCACGGCGAAAACCGCTACGCTTGCGATCAGTGCAATAAGACCTACAAGAACTCGTTTCAGTTGTGCATCCACAACTTCGTCGCCCATCCCGGCGACGGCAAGTACAAATGTATCGCGTGCGATTTTAGTACCGCTCAAAGGGCGACCATAAAGACTCACATCGAGAAGCACGAGCAAGATTATAAATATCAGTGCGATATTTGCGACAAAACGTTTTTGACCGCCACCTGGTTCGAGCAGCACAAGATCTCGCACGTCGGCGCCATGCCGTTCCAGTGCGAGATTTGCTCGAAGAGCTTCCCGTACTCGCGTTACCTGGTCACTCACAAGAAGAGTATGCACCCCCAAATTTACTCGGGCTCGCCGGCGGTGAACAAGTGCGACGTGTGCAACAAGCAGTTTGCGCACAAGAAAAGCCTGATTTTGCACGTGAAGTCGCACACGGGCGAGAACGCGGTACTGTGCGACATATGCGGGAAGCGCTTGTCGAGCACGGAACATCTCAAGCAGCATCTGCGCATCCACACTGGTTACAAGCCGCACGTCTGCAACGTTTGCGGAAAGGGCTTCGCGAAAAAGAGCAACTTGACGTTGCACGAACGCGTGCACAGCGGGGAAAAGCCGTACATCTGCCGGGAGTGCGGCAAGTGCTTTTCCCAGCGGTCCACGCTAGTGATTCACGAGAGATATCATTCCGGAGAGAGGCCGTACAATTGTCCGTTGTGCAATAAGGGGTTCGTGGCGAAAGGCTTGTTGGGCGTTCACTTCAAGAGCTGCTCGAGGATAGCTGGAGATTCTAGCTTGCAAAGCGAGCTGTGCGACGTGCCCAAAGGGCACGAACAATACCACCGGCTGAAGCACATCCGCCGGCATCTCTTAGGCGAGATTCTAGCTCACGAAGCGAGTCGACCTGAAAGGCAGATTTCGTGGTTGGCTTCGCGCGAAACGCTTTTTCGAGGCGATTTGGGGGGCTCACGTTCGACTTTAACTTCAGCTCGAACGAGATTTTGCGAAATTGCCTGGTTTGCGGGGGTTTTGGAGGGCGATATCGGTCGCAAAAATTACCAGAGGACAATAGGATACTTGCCGCGCGCGTTTCCCGCAATTTTCGACGCCCCGACGAGGATATCTACTAAAACAGGTCAGACGCAGGAGAACGTGGAAACAATTTTCGACATACCGAACTTTATTTCCGCCGCACGTCAGAATTTGGCTTTTGATCCCCTTCTAACCAACGTTTTATTAGCGGATGTGTCGTGTACGATTTGTGGCAAGGTATTCGAAAATAgtcgaaaattaagaaaacaccAACAAAGACACGTCGATAAGTCTCATCCATGTTCGCTCTGCAGCAAATGCTTCAAATCTAATTACGAGGTCTTGGCGCATAAGAAGTGGACGCACCCCGAAATGTATGCGGGCTCGTCGGAAGTGTACAAGTGCGACGTGTGTAAAAAACAGTTTCCGCACAGCAAGAGTTTGAATGCGCACGTGAAATGCCATACGGGCGAGAACGCGGTGCTGTGCGACGTATGCGGAAAGAGCTTGTCGTGCCCGGTGCAATTCAAACTTCACATGCGCACCCACACCGGTTACAAGCCGCACGTGTGCAAAGATTGCGGCAGGTGCTTCGCCAGGATGAACAGTTTGAAGATGCACAAACGGCTGCACAGTGGGGAAAAACCGTACATCTGCAGTGAGTGTGGAAAGTGCTTCACCCAACAGTTCTCGCTGATCACACACGAAAAATGCCATTCAGGGGAGAGATCGCATAAATGTTCGTTGTGCAATAAGGGGAATTTTGATCCCCTTCTAATCAACGCTTCGCAAACAAACCTCTCGTGCAACTTTTGCACGAAAGTATTCGAAAACGtccgaaaatttaaaagacacAAAGAAAGACACGCCGACAAGTCGCATCCGTGCACTGTTTgcggtaaatatttcaaatcaaATTACGAGATGGTGGTGCACAAGAAGAAAATTCACATTAAAGATTTCAAGCATTTCTGCGACATTTGCGACAAAGGTTTTTTGTACGAGGTGGAGTTGACGAATCATCAGAGAGTTCATTCTAAGGAGTATAGGTACAGGTGCGATCAGTGCGGTAGCGGCTTTTATCAACAGAGCGCGTATCAGATGCATTACAGTGTGCAACATCAAGGCCTGCGGTTTCATTGCGACCAGTGCGAGAAGATATTCAAGAACAAAGATAGCTTCAAGAATCACGTTGTGACGCACGATCCCGATTCGAGCACGCCTTGTACGTGCGAATTGTGCGGGAAGTTTCTGAAAAATTTGCGATCTTTGAGGGTTCACATGAAAAGCCATAATAGTGAAAGGAAGAAGCACGTGTGCCACGTCTGCGGCAAGGCAGTCACTTCGATCACTAGTTTGCGGGACCATTTGAAGTTGCACACCGGAGAGAAGTCGTTCGGTTGCCATTATTGCGAGAAAAAGTTTCGTAACCGTAACCAGATGACCATGCACGAACGAACGCACACCAAAGAAAAACCGTACGCCTGCAATATATGTTCGAAGAGGTTCTCGCAGTGCGGCTCGTTGACCATTCACAAGCGCTACCACACGGGCGAGAAGCCGTACAAGTGCGACATATGTTGTAAAAGTTTCGTCACGGGACACTTACTGAAGACTCACTCCAAAGTACACGGCACACCCTTGGGACAATAA
Protein Sequence: MNEVVTRKRSLLASKENWSDRLPEIDIIPVLREGDKGYTLPDFKMITCKMEMLDDDNEKPTKRASKKGKRGASDAGYKNPFVYTNLDHSKKGRESKQTGANVTKWVCMICNEATKGKQSLIDHYEQHKNEKEINADQPKAKNNIEDYFKCVICNREFTSSRSYEKHLELKHGENRYACDQCNKTYKNSFQLCIHNFVAHPGDGKYKCIACDFSTAQRATIKTHIEKHEQDYKYQCDICDKTFLTATWFEQHKISHVGAMPFQCEICSKSFPYSRYLVTHKKSMHPQIYSGSPAVNKCDVCNKQFAHKKSLILHVKSHTGENAVLCDICGKRLSSTEHLKQHLRIHTGYKPHVCNVCGKGFAKKSNLTLHERVHSGEKPYICRECGKCFSQRSTLVIHERYHSGERPYNCPLCNKGFVAKGLLGVHFKSCSRIAGDSSLQSELCDVPKGHEQYHRLKHIRRHLLGEILAHEASRPERQISWLASRETLFRGDLGGSRSTLTSARTRFCEIAWFAGVLEGDIGRKNYQRTIGYLPRAFPAIFDAPTRISTKTGQTQENVETIFDIPNFISAARQNLAFDPLLTNVLLADVSCTICGKVFENSRKLRKHQQRHVDKSHPCSLCSKCFKSNYEVLAHKKWTHPEMYAGSSEVYKCDVCKKQFPHSKSLNAHVKCHTGENAVLCDVCGKSLSCPVQFKLHMRTHTGYKPHVCKDCGRCFARMNSLKMHKRLHSGEKPYICSECGKCFTQQFSLITHEKCHSGERSHKCSLCNKGNFDPLLINASQTNLSCNFCTKVFENVRKFKRHKERHADKSHPCTVCGKYFKSNYEMVVHKKKIHIKDFKHFCDICDKGFLYEVELTNHQRVHSKEYRYRCDQCGSGFYQQSAYQMHYSVQHQGLRFHCDQCEKIFKNKDSFKNHVVTHDPDSSTPCTCELCGKFLKNLRSLRVHMKSHNSERKKHVCHVCGKAVTSITSLRDHLKLHTGEKSFGCHYCEKKFRNRNQMTMHERTHTKEKPYACNICSKRFSQCGSLTIHKRYHTGEKPYKCDICCKSFVTGHLLKTHSKVHGTPLGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -