Rgig009341.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000019.1:4706601-4709801[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0016 0.15 13.4 0.5 1 23 9 32 9 32 0.96
2 25 0.00028 0.027 15.7 0.3 1 23 38 60 38 60 0.97
3 25 2.6 2.5e+02 3.3 3.6 1 17 66 82 66 91 0.78
4 25 0.00015 0.014 16.6 0.2 1 23 96 118 96 118 0.98
5 25 7.3e-05 0.0068 17.6 2.3 1 23 124 146 124 146 0.97
6 25 0.005 0.47 11.8 4.0 1 23 152 174 152 174 0.95
7 25 0.00015 0.014 16.6 0.8 1 23 197 219 197 219 0.99
8 25 0.00059 0.056 14.7 0.5 2 23 225 247 224 247 0.95
9 25 0.045 4.2 8.8 0.1 1 23 253 275 253 275 0.96
10 25 0.044 4.1 8.8 2.1 1 23 281 304 281 304 0.95
11 25 6.6e-07 6.1e-05 24.0 4.6 1 23 309 331 309 331 0.97
12 25 0.081 7.5 8.0 4.1 1 23 339 361 339 361 0.97
13 25 9.9e-05 0.0093 17.2 1.2 1 23 368 390 368 390 0.97
14 25 0.00013 0.012 16.8 0.3 1 23 396 418 396 418 0.98
15 25 1.7e-05 0.0016 19.5 3.7 1 23 424 446 424 446 0.98
16 25 0.00024 0.023 16.0 1.8 1 23 463 485 463 485 0.99
17 25 0.0046 0.43 11.9 2.4 2 23 491 513 489 513 0.91
18 25 0.095 8.9 7.8 1.8 1 23 519 541 519 541 0.96
19 25 0.027 2.5 9.5 3.3 1 23 547 570 547 570 0.95
20 25 1.5e-06 0.00014 22.9 4.4 3 23 577 597 575 597 0.98
21 25 1.9e-05 0.0018 19.4 0.7 1 23 606 628 606 628 0.98
22 25 5.7e-06 0.00053 21.1 0.2 1 23 635 657 635 657 0.98
23 25 2.1e-05 0.0019 19.3 0.4 1 23 663 685 663 685 0.97
24 25 0.00027 0.025 15.8 0.4 1 23 691 713 691 713 0.98
25 25 1.2e-06 0.00011 23.2 1.5 1 23 719 741 719 741 0.98

Sequence Information

Coding Sequence
ATGCGAAGACACCGCGACAAGAAGTATCCGTGCGACGCGTGCGGCAGAAAATTCCGATACAATTACGAGATGTCGGTGCACAAGCTGCGGGTCCACACGAAAGACTTCAAACATTCTTGCAGCATCTGCGGTAAAGGTGTTCGATACGAAATCGAGCTAATTAATCACCAAAAGATACATTCTAAAGAGTATAGGTACACGTGCGACCAGTGCGGTAGCGGTTTCCACCAACGTAGTATGTTTCGTTTGAGGGATCACTTGAAAGTGCACACCGGAGAGAAGCCGTTCGAGTGCCAGTATTGCGGGAAGAAAATCATAAGCAGTAAGCTACTGATCGTGCACGAACGAATTCACACCAAGGAGAAACCCTACGCTTGCGGTGTCTGTTCGAAGAGCTTCTCTCAGTGCGGCACGTTGACCATACATAAGCGCTACCACACGGGCGAAAAACCATACAAATGCGATATTTGTAGTAAaggttttattactaaaacgGTGCTCAGGACTCATTGTAAAAAACATGGCACGTCCCTGGGACAgaagTCCTCCGTCCAAAACTGGACAGTTCAAGATGATGCCCAAACAGTTTACGAGTGCAAAGTGTGCGACGCATTTTTCCCAAACGGATACAAACTGAAAATTCACAGGAGGCGTCACGTCGAGAAAAAGAGTCCGTGCGACGTGTGCGGCAAAAAATTCAGATACAATTACGAGGTGTCGATGCACAAGCAGCGGGTCCACACGAAAGACTTCAAACATTCTTGCGATATTTGCGGTAAAGGTGTTCTGTACGAAATCGAGCTCATTAATCACCAGAAGATACATTCTAAAGAGTATAGATACACGTGCGACCAGTGCGGTAGTGGTTTCCACCAACGTAACATGTTTATGACGCATTACGATGTCCAACATCGGGGCGTTCGGTTTCACTGTGAACGATGTGACAAGTCGTTCACAAGCAAAAGTTACCTAAAAAAGCACATGTTGATACATAACTCCGAACCGGTCAAAGTATATAAATGCGATTTGTGCCATAAAGTGATGAAACACCTAAGTACGTATCGAGGTCACGTGAAGGGTCATAGCGATGAAAGACGAAAGCACGTGTGCCATGTCTGCGGTAAGGCGGTCACTTCGACCGCCAGTTTGAGGGATCACTTGAAATTGCACACCGGAGAGAAGCCGTTCGAGTGCCAGTATTGCGGGAAGAAAATCATCAACCGTAAACTACTGATCGTACACGAACGAATTCACACCAAGGAGAAACCCTACACTTGCGATATCTGTTCGAAGAGCTTCTCGCAGTGCGGCACGTTGACCATACACAAGCGCTACCACACTGGCGAGAAACCGTACAAgagTCCCGTCCAAGTTGCCCAAACAGTTTACAAGTGCAAAATTTGCGACGCCTTTTTACCGAACCGATCCAAACTGAAAATGCACAAGAGACGACACGCCGAGAAAAAGTGTCCGTGTGACGTGTGCGGCAAACAATTCCGGTACAATTCCGAGACGTCGTTGCACAAACAAAAGGTCCACACAAAAAACTTCAAACATTCCTGCGACTTGTGCGGCAGGAGATTCTTGTACGAAAACGATGTAATTAATCACAAAAAAACTCATACCAAGGAGTACAGGTATAAGTGCGACCAGTGCGACAGCGGTTTCTACCGACACAACACGTTTCGAACGCATTACGATGTCGAACATCGGGGCGTTCGGTTTGGGTGCCAACAGTGCGACAAGTCGTTCAAAAGCACAAGTCATCTAAAAAAGCACATGCTGACCCACAATCCGGAAGTAAACGTTGAAGTGTTTAAATGCGATTTGTGCGATAAGGTTCTGAAGCAATTGAGTTCGTATGAAAATCACATGAAGGGCCATAACAACGAAAAACGGATGCACGTGTGTCACATCTGCGGTAAGGCAGTCGCTTCGGCCGACGGCTTGAACAATCATTTGAGAGTGCATACTGGGGAGAAGCCGTTCGCGTGCGATAATTGCGGGAAGAAGTTTGCCATTCGTTCTCAACTGCTCCGTCACGAGCTGACACACACCGAAAAGAAACCGTACGTCTGCGAATTTTGTTCGAAGGGTTTCGCGCAGATCGGATCGTTGACCATCCATAAGCGTTATCATACCGGCGAGAGACCGTTCAAGTGTGATATATGCAATAAAAGCTTCGTATCTAAAACTTTGCTCATGAGTCACCGAAAAGTACACGGCACACCTTTGGGACAGTGA
Protein Sequence
MRRHRDKKYPCDACGRKFRYNYEMSVHKLRVHTKDFKHSCSICGKGVRYEIELINHQKIHSKEYRYTCDQCGSGFHQRSMFRLRDHLKVHTGEKPFECQYCGKKIISSKLLIVHERIHTKEKPYACGVCSKSFSQCGTLTIHKRYHTGEKPYKCDICSKGFITKTVLRTHCKKHGTSLGQKSSVQNWTVQDDAQTVYECKVCDAFFPNGYKLKIHRRRHVEKKSPCDVCGKKFRYNYEVSMHKQRVHTKDFKHSCDICGKGVLYEIELINHQKIHSKEYRYTCDQCGSGFHQRNMFMTHYDVQHRGVRFHCERCDKSFTSKSYLKKHMLIHNSEPVKVYKCDLCHKVMKHLSTYRGHVKGHSDERRKHVCHVCGKAVTSTASLRDHLKLHTGEKPFECQYCGKKIINRKLLIVHERIHTKEKPYTCDICSKSFSQCGTLTIHKRYHTGEKPYKSPVQVAQTVYKCKICDAFLPNRSKLKMHKRRHAEKKCPCDVCGKQFRYNSETSLHKQKVHTKNFKHSCDLCGRRFLYENDVINHKKTHTKEYRYKCDQCDSGFYRHNTFRTHYDVEHRGVRFGCQQCDKSFKSTSHLKKHMLTHNPEVNVEVFKCDLCDKVLKQLSSYENHMKGHNNEKRMHVCHICGKAVASADGLNNHLRVHTGEKPFACDNCGKKFAIRSQLLRHELTHTEKKPYVCEFCSKGFAQIGSLTIHKRYHTGERPFKCDICNKSFVSKTLLMSHRKVHGTPLGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-