Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: -
Assembly: GCA_036326145.1
Location: JARFJA010000019.1:4672448-4678591[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00032 0.03 15.6 1.5 1 23 16 39 16 39 0.97

2 26 0.0002 0.018 16.2 0.3 1 23 44 67 44 67 0.95

3 26 0.00059 0.055 14.7 0.2 3 23 76 96 74 96 0.97

4 26 0.00021 0.019 16.2 0.9 1 23 102 124 102 124 0.98

5 26 4.3e-06 0.0004 21.5 3.3 1 23 130 152 130 152 0.98

6 26 0.0017 0.16 13.3 3.6 1 23 158 180 158 180 0.97

7 26 3.3e-05 0.003 18.7 1.9 2 23 204 226 203 226 0.96

8 26 4.9e-05 0.0046 18.1 2.4 1 23 231 254 231 254 0.96

9 26 0.0066 0.61 11.4 0.1 3 23 262 282 260 282 0.96

10 26 2.2 2e+02 3.5 5.0 1 19 288 306 288 312 0.96

11 26 3.2e-05 0.003 18.7 4.0 1 23 316 338 316 338 0.97

12 26 1.1 1.1e+02 4.4 3.1 1 23 347 369 347 369 0.90

13 26 2e-06 0.00018 22.5 0.1 1 23 375 397 375 397 0.98

14 26 0.0015 0.14 13.5 1.0 3 23 405 425 403 425 0.98

15 26 0.0001 0.0098 17.1 5.0 1 21 431 451 431 453 0.95

16 26 8.2e-07 7.7e-05 23.7 1.5 1 23 459 481 459 481 0.99

17 26 0.00017 0.016 16.5 3.0 2 23 507 528 506 528 0.97

18 26 0.057 5.3 8.5 3.3 1 23 533 556 533 556 0.92

19 26 0.0006 0.056 14.7 3.7 1 23 562 584 562 584 0.98

20 26 0.003 0.28 12.5 2.2 1 23 590 613 590 613 0.95

21 26 0.00051 0.048 14.9 4.7 1 20 618 637 618 640 0.95

22 26 0.04 3.8 9.0 1.8 1 23 649 671 649 671 0.98

23 26 6.6e-07 6.2e-05 24.0 0.5 1 23 677 699 677 699 0.97

24 26 0.0016 0.15 13.4 0.9 3 23 707 727 705 727 0.98

25 26 1.9e-05 0.0017 19.5 3.0 1 23 733 755 733 755 0.98

26 26 1.6e-06 0.00015 22.8 3.5 1 23 761 783 761 783 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00032	0.03	15.6	1.5	1	23	16	39	16	39	0.97
2	26	0.0002	0.018	16.2	0.3	1	23	44	67	44	67	0.95
3	26	0.00059	0.055	14.7	0.2	3	23	76	96	74	96	0.97
4	26	0.00021	0.019	16.2	0.9	1	23	102	124	102	124	0.98
5	26	4.3e-06	0.0004	21.5	3.3	1	23	130	152	130	152	0.98
6	26	0.0017	0.16	13.3	3.6	1	23	158	180	158	180	0.97
7	26	3.3e-05	0.003	18.7	1.9	2	23	204	226	203	226	0.96
8	26	4.9e-05	0.0046	18.1	2.4	1	23	231	254	231	254	0.96
9	26	0.0066	0.61	11.4	0.1	3	23	262	282	260	282	0.96
10	26	2.2	2e+02	3.5	5.0	1	19	288	306	288	312	0.96
11	26	3.2e-05	0.003	18.7	4.0	1	23	316	338	316	338	0.97
12	26	1.1	1.1e+02	4.4	3.1	1	23	347	369	347	369	0.90
13	26	2e-06	0.00018	22.5	0.1	1	23	375	397	375	397	0.98
14	26	0.0015	0.14	13.5	1.0	3	23	405	425	403	425	0.98
15	26	0.0001	0.0098	17.1	5.0	1	21	431	451	431	453	0.95
16	26	8.2e-07	7.7e-05	23.7	1.5	1	23	459	481	459	481	0.99
17	26	0.00017	0.016	16.5	3.0	2	23	507	528	506	528	0.97
18	26	0.057	5.3	8.5	3.3	1	23	533	556	533	556	0.92
19	26	0.0006	0.056	14.7	3.7	1	23	562	584	562	584	0.98
20	26	0.003	0.28	12.5	2.2	1	23	590	613	590	613	0.95
21	26	0.00051	0.048	14.9	4.7	1	20	618	637	618	640	0.95
22	26	0.04	3.8	9.0	1.8	1	23	649	671	649	671	0.98
23	26	6.6e-07	6.2e-05	24.0	0.5	1	23	677	699	677	699	0.97
24	26	0.0016	0.15	13.4	0.9	3	23	707	727	705	727	0.98
25	26	1.9e-05	0.0017	19.5	3.0	1	23	733	755	733	755	0.98
26	26	1.6e-06	0.00015	22.8	3.5	1	23	761	783	761	783	0.99

Sequence Information

Coding Sequence: ATGGATAAATTCAAGCTCCACAGAAGCATTACGCACAACGAGAAGTACTTCTGCTACGTATGCGACATAAATTTCAAGTTCCAATGCGAATTGGAAGCTCATCAGAGGGTAATCCATAAAAAAAAGGTGTTCAAGTGCCAATCGTGTCCGAAGATGTTTAAGACCGCTGCGAAACTGGTCGTCCACAGCAGAGGTGCACATCGATCGGTGAAGAGGGAGCAAATATGCGATATTTGCGGTTTAAAACTCTCCTCGATGGTCACCTTAAATCGTCACTTGAGGGTGCATACGGGAGAGAAGCGTTACATTTGCGAGTACTGCGGGATGAAATTTAGAGCTAACAATGGGATGAAATTACACAGACGGACGCATACTAACGAGCGGCCGTACACGTGCCACGAGTGTTCCAAAAAGTTTTCGAAGAAAACCGCGTTAATCGTCCATATTCGTTATCATACCGGCGAACGGCCGTACACCTGCCACATCTGTGGTAAGAAATTTTTTACTACGTCTGCTAAAAAGTACCACGTCGGTACTCATGGGAAACCTATTGGGTGCACGAACTTCACTTCCTTCTCGCAGACGTGTCAGGAAATAAACGACCAGCTAACGTGCAACGAGTGCGATAAAACGttcgaaacaaaattaaaacttaaatatcaCCAGAAACGGGCGCATCGCGCGAAGAACTACGAATGCGACGTTTGCGACAAACACTTCAAATTTCCTTACGAATTGAAATTGCATAAAAAACAGGTGCACACCAAAGACTTCAACGACATCTGCGATATTTGCGATAAGGGCTTCGCATCCGTGTCAATATTGACGTATCACCGAAAATCGCACTTCAGCGGCTACAAATTTAAGTGCGACAAGTGCGATAGCGGTTTTTACCAGCGCAGCGTGTATCAGAATCATTGCGACACCTGTCAGCGAGGCGTTCGCTACGACTGCGAGTATTGTAAGAAAACTTTCAGGTCcaaaaattactttagaaCGCACCTTTTGTCGCACGATCCCAATCACGTGAAGAAACAGTATAAGTGCGAGTTGTGCGGAAAAATTCTGCTGCACCTAAAATCCCACATCAAACACATGAAGGTGCACAACGGGATGGTTCAGTACGTGTGCGACGTTTGCGGCAAGTCCGTGGCTTCGACCGACAGTCTGCGTAATCACATGAGGCTACATACCGGTGAAAAGCCGTTCGGTTGCAAGTTCTGCGAAAAGAAGTTCATCAGTCGAAATCTGTTGATGATGCACGAACGGGTCCACACCAAGGAGAAGCCGTTCGTCTGCAATTTGTGCGAGAAGAGCTTCTCGCACCGTACCACGTTGACCATTCACATGCGGTGTCATACGGGCGAAAGGCCGTACCGTTGCGACATCTGCAGCAAGAACTACATCACCAATTCGCAACTGAAAAGACATCTAAAGATTCACGGCACGCCTATGCGGGACACAAAGCCGGTCATAATAGTATCCAATACAATTTTCAAGAACTTAAACGATACGGTAAGGTGTCGCAAATGCAATCAAACGTTCGAAACCCGATCGAAGTTGAAGAATCACAGTCGCGTTCATCTCGATAGGAAGCACAAGTGCGACGTGTGCAATAAAGGCTTCAAGTACCACTACGAAGTGGGATTGCACAAAAAGTTGGTTCACATTAAAGACTTGAAGCACACGTGCGACATCTGCAGTAGAGGCTTCACCTTCAAGTACATGCTAAACTACCATCGCAAAGTCCACTTCAAGGAGTACAAGTTCAAGTGCGACAAATGCGACAGCGGTTTCTACTATCAGAACGACTTTCGAAGACATTACGACGTCCAACATTGCGGCTTACGTTACGTTTGCGAGCATTGCAACAAAGCTTTCAAGGACGAAGGGTACTTCAAAAAGCACCTGCTGTGCCACAAACCCGATTTCGTCAAGCAACAATACACGTGCGAACTGTGCGGAAAAGTGCTGCAGTCGTTACGAACTCACGTGAAGCACATGAAGATGCACAACGGGAGGGACCAGCACGTGTGCGACATCTGCGGAAAATCCGTGACTACGGCCGACAGTCTGCGAAACCACATGAAGTTACATTCCGGGGAACGACCGTTCGGTTGCAAGTTCTGCGAGAAGAGGTTCATCAGTCGGAAGCTGCTGGTGATGCACGAACGGATCCACACCAAGGAGAAGCCGTACAGTTGCGACATGTGCTCGAAGAGCTTCTCCCAATGCGGAACTCTGACTATTCACAAGCGCGTTCACACCGGCGAAAAGCCGTACCAGTGTCACATTTGTAACAAAAAGTTTGTCACTAAGGCGCTGATGAAAAGTCACATTAAAACTCACGGCACGCCGCTGGTGTAG
Protein Sequence: MDKFKLHRSITHNEKYFCYVCDINFKFQCELEAHQRVIHKKKVFKCQSCPKMFKTAAKLVVHSRGAHRSVKREQICDICGLKLSSMVTLNRHLRVHTGEKRYICEYCGMKFRANNGMKLHRRTHTNERPYTCHECSKKFSKKTALIVHIRYHTGERPYTCHICGKKFFTTSAKKYHVGTHGKPIGCTNFTSFSQTCQEINDQLTCNECDKTFETKLKLKYHQKRAHRAKNYECDVCDKHFKFPYELKLHKKQVHTKDFNDICDICDKGFASVSILTYHRKSHFSGYKFKCDKCDSGFYQRSVYQNHCDTCQRGVRYDCEYCKKTFRSKNYFRTHLLSHDPNHVKKQYKCELCGKILLHLKSHIKHMKVHNGMVQYVCDVCGKSVASTDSLRNHMRLHTGEKPFGCKFCEKKFISRNLLMMHERVHTKEKPFVCNLCEKSFSHRTTLTIHMRCHTGERPYRCDICSKNYITNSQLKRHLKIHGTPMRDTKPVIIVSNTIFKNLNDTVRCRKCNQTFETRSKLKNHSRVHLDRKHKCDVCNKGFKYHYEVGLHKKLVHIKDLKHTCDICSRGFTFKYMLNYHRKVHFKEYKFKCDKCDSGFYYQNDFRRHYDVQHCGLRYVCEHCNKAFKDEGYFKKHLLCHKPDFVKQQYTCELCGKVLQSLRTHVKHMKMHNGRDQHVCDICGKSVTTADSLRNHMKLHSGERPFGCKFCEKRFISRKLLVMHERIHTKEKPYSCDMCSKSFSQCGTLTIHKRVHTGEKPYQCHICNKKFVTKALMKSHIKTHGTPLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -