Rgig004455.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000001.1:50822984-50830625[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0058 0.54 11.6 0.5 1 23 151 173 151 173 0.97
2 19 3.2e-05 0.003 18.7 3.8 2 23 178 199 177 199 0.97
3 19 2e-05 0.0019 19.3 0.7 3 23 207 227 205 227 0.96
4 19 1.3e-06 0.00012 23.1 2.4 1 23 233 255 233 255 0.99
5 19 1.9e-05 0.0018 19.4 2.8 3 23 263 284 261 284 0.95
6 19 4.4e-06 0.00041 21.4 0.7 1 23 293 315 293 315 0.99
7 19 8.4e-05 0.0078 17.4 1.7 2 23 336 358 335 358 0.95
8 19 4.5e-06 0.00042 21.4 0.9 3 23 366 386 364 386 0.96
9 19 1e-07 9.7e-06 26.6 2.5 1 23 392 414 392 414 0.99
10 19 0.0024 0.23 12.8 5.9 1 23 420 443 420 443 0.96
11 19 0.00041 0.039 15.2 0.2 1 23 452 474 452 474 0.99
12 19 2.9e-06 0.00027 22.0 4.6 1 23 480 502 480 502 0.98
13 19 3.8e-05 0.0036 18.5 5.0 1 23 508 530 508 530 0.97
14 19 4.5e-06 0.00042 21.4 0.9 3 23 535 555 533 555 0.96
15 19 5.9e-08 5.5e-06 27.3 2.0 1 23 561 583 561 583 0.99
16 19 3.3e-05 0.0031 18.7 0.4 1 23 589 612 589 612 0.97
17 19 0.00052 0.049 14.9 0.3 1 23 621 643 621 643 0.99
18 19 5.4e-06 0.00051 21.2 5.9 1 23 649 671 649 671 0.97
19 19 3.8e-05 0.0036 18.5 5.0 1 23 677 699 677 699 0.97

Sequence Information

Coding Sequence
ATGGAGCAGAACAGCAAAATTAAGATTTGTAGAACATGTTTAAATGGAATTGAGAAAAACGAACATATATCCATATATATGATATCAAGCATTTTAATGTCTTTTACATCagtaaacatTTCAGAAAATGATGGCTTGCCAGTCAATATATGCAGCAATTGTTACAAACAAGCGAACGATGCTtaccaatttaaattattatgtgaACAGTcagataaaaaattacaaagtaTTTACATGTATAATGGCAAGGATGTAAATACTATTGAAAATAGTAGTACGAATTTAACTTCCTTAATAAATGATTTGCCAAacataacaaatattaaatctgAAGAAAAAGAAGAATTACCTCAAATAAGTGATGAAATTGATACTTTCGACTGTGAAagagaaataaataaagatgaaataaaacaagaaatatcCATTGacaaagaaaataagtgcTTTACTTGCAAATTCTgtaatgcaatttttattaaccagGGTCGACTTTTAAACCATGAAGCAAAGCACAAAACGGGCACGACTTGTAACATTTGTAataaaaaatttacaacttctaaaaaattaactgaTCATAGTAGGCGTCATAATCGTAAAGACATTCATCTTTGTCAAACTTGTGGAAAGCAATTTACGTTGCCTGAAAATTTAGTAGTTCACCAAAGAATTCACACTGGTATTCGTCCTTATAAATGTAAACAGTGTAGTAAATCGTTTACTCAATCAAACGACTTAAAATCACATGTTATAACTCACACAACCGAAAAACCTCATTTGTGTAACGTATGTGGTACAAAATATGCACGAAAAACTGCACTTCGAAGGCATATGAAGAGAACACATTCAAATACAAGCAATTTGCGACCATATAAATGTGTCGTGTGTGATCGAGGTTTCAAAGaaaaaacagAATTAAATCGACATCTTAAAATCCACAATGATGGAAAACcgcatGCTTGGCTTTTAAAACACGAAACAAACCACAAAACAAGCATTACTTGTAACGTTTGTCataAGACATTTATAACTTccataaaattatcgaaacatatttataaagcTCATAGTCGTAAAGGAGCCCATCTTTGTCAAACTTGTGGAAAGCAATTTACGTATCCTGAAAATTTAGTAGTTCACCAAAGGATTCACAGTGGTATTCGTCCTTATAAATGTAAAGAGTGTAATAAATCATTTACTCGATCAACTATGTTAAAATCACATATTATAACACACACATCTGACAAACCTCATAAGTGTTGCATATGTGATAATAAATATGCACGAAAAAGATCACTTCAGCGACATATCGAGAGAAAACATTTGAATACAAGCAATTTACGACCATATAAATGTGTTATATGTGATGGAGATTTTAAAGcAAAAGAGGATCTAAATCAACATCTCAAAATTCATAAGGAAGAAAGGCagcatgtttgtaaaacctgTGGTAAATGTTTTAACAGCAGTAGAAATTTGATAGTTCACGAGCGTACCCACTCAGGGGATCGTCCATTTGCGTGTCACATCTGTAAAAAATCTTTCATACAGAAACATGTACTGAATTCTCATTTGAAAACTCACAGGGCCCATCTTTGTCAAACTTGTGGAAAACAATTTACGTATCCTGAAAATTTAGTAGTTCACCAAAGGATTCACAGTGGTATTCGTCCTTATAAATGCAAAGAGTGTAATAAatCGTTTACCCAATCAACTGAGTTAAAATCGCATATTATAACACACACATCTGAAAAACCTTATCAGTGTGGCATATGTGATAATAAATATGCACGAAAAAGAGCACTTCGACAACATATGGAGAGAATACATTTGAATACAAGCAATTTACGACCATATAAATGTGTTATATGTGATGGAGATTTTAAAGcAAAAATGGATCTAAATAAACATCTGAAAATTCATAAGGAAGAAGGGCAGCATATTTGTAAAACCTGTGGTAAATGTTTTAACAGCAGCAGAAATTTGAAAGTCCATGAGCGTACACACTCAGGAGATCGTCCTTTTGCATGTCACATTtgtaaaaaatcttttatacAAAAACATGTACTGAATTCTCATTTGAAAACACAcagtatataa
Protein Sequence
MEQNSKIKICRTCLNGIEKNEHISIYMISSILMSFTSVNISENDGLPVNICSNCYKQANDAYQFKLLCEQSDKKLQSIYMYNGKDVNTIENSSTNLTSLINDLPNITNIKSEEKEELPQISDEIDTFDCEREINKDEIKQEISIDKENKCFTCKFCNAIFINQGRLLNHEAKHKTGTTCNICNKKFTTSKKLTDHSRRHNRKDIHLCQTCGKQFTLPENLVVHQRIHTGIRPYKCKQCSKSFTQSNDLKSHVITHTTEKPHLCNVCGTKYARKTALRRHMKRTHSNTSNLRPYKCVVCDRGFKEKTELNRHLKIHNDGKPHAWLLKHETNHKTSITCNVCHKTFITSIKLSKHIYKAHSRKGAHLCQTCGKQFTYPENLVVHQRIHSGIRPYKCKECNKSFTRSTMLKSHIITHTSDKPHKCCICDNKYARKRSLQRHIERKHLNTSNLRPYKCVICDGDFKAKEDLNQHLKIHKEERQHVCKTCGKCFNSSRNLIVHERTHSGDRPFACHICKKSFIQKHVLNSHLKTHRAHLCQTCGKQFTYPENLVVHQRIHSGIRPYKCKECNKSFTQSTELKSHIITHTSEKPYQCGICDNKYARKRALRQHMERIHLNTSNLRPYKCVICDGDFKAKMDLNKHLKIHKEEGQHICKTCGKCFNSSRNLKVHERTHSGDRPFACHICKKSFIQKHVLNSHLKTHSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-