Rgig025600.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
ZNF236
Assembly
GCA_036326145.1
Location
JARFJA010000093.1:7910880-7920041[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00025 0.023 15.9 0.6 1 23 133 155 133 155 0.98
2 25 4.7e-05 0.0043 18.2 0.6 1 23 161 183 161 183 0.98
3 25 5.5e-05 0.0051 18.0 0.1 2 23 189 210 189 210 0.97
4 25 0.0026 0.24 12.7 0.1 1 23 216 238 216 238 0.98
5 25 0.015 1.4 10.3 0.5 2 23 253 274 252 274 0.96
6 25 2.3e-06 0.00021 22.3 2.2 1 23 299 321 299 321 0.98
7 25 0.0011 0.1 13.9 3.4 1 23 327 349 327 349 0.95
8 25 0.0003 0.028 15.7 0.6 1 23 355 378 355 378 0.97
9 25 0.00029 0.027 15.7 3.1 1 23 388 411 388 411 0.97
10 25 2e-08 1.9e-06 28.8 0.3 1 23 484 506 484 506 0.99
11 25 1.4e-06 0.00013 23.0 2.8 1 23 512 534 512 534 0.99
12 25 0.059 5.5 8.5 3.9 1 23 540 562 540 562 0.94
13 25 3.5e-05 0.0033 18.6 3.1 1 23 629 651 629 651 0.98
14 25 3.4e-05 0.0032 18.6 2.3 1 23 657 679 657 679 0.97
15 25 9.7e-05 0.009 17.2 1.1 1 23 685 707 685 707 0.97
16 25 0.013 1.2 10.5 6.4 1 23 713 735 713 735 0.98
17 25 0.1 9.5 7.7 2.6 1 21 1058 1078 1058 1079 0.93
18 25 0.00013 0.012 16.8 0.4 1 23 1117 1139 1117 1139 0.99
19 25 1.1e-05 0.001 20.2 2.9 2 23 1149 1170 1149 1170 0.97
20 25 2e-05 0.0018 19.4 4.6 1 23 1176 1198 1176 1198 0.98
21 25 0.00014 0.013 16.7 0.4 1 23 1206 1228 1206 1228 0.97
22 25 4.7e-05 0.0044 18.2 1.3 1 23 1234 1256 1234 1256 0.98
23 25 0.00033 0.031 15.5 1.7 1 23 1357 1379 1357 1379 0.98
24 25 0.042 3.9 8.9 0.2 1 23 1385 1407 1385 1407 0.97
25 25 0.01 0.96 10.8 3.2 1 22 1413 1434 1413 1434 0.95

Sequence Information

Coding Sequence
ATGTACGCATACATAGCCATACCAATAGAAATGTTGCAGCAATATAACGATCAGGGCATTCAGTCGCTTACACTGGCACAAGATGTTAGTCTTAAAACGCTTCCCGatggaaatataaatcaacAAATTCAGGAGCACGAAGTACTTAAAAACGTTATCCTCATGCCAATAATTAACAGCGACAATCAACTTTACAATGGATCTTCTGAAAAATTAGGTCAGCTAGTTATGGAAACTATAAATGAACCAAATAGTAACGATATGGGTAAAGGCGCTATAAGGAAATCGGTTATACTCAAATCCTCGTCTAGCAATTTAAACCGAAAAGAGGtacgatatttaaaatgtaaggCATCGCAAAACAAAAAGGTTTCCGTGACAAAAACCAAAGAAGGTTTTAAATGTACAATATGTGGAgtagtattcgataaaatgatGCTTTATCGTAAACATATGGAGATGCACACTAATGTAAAAAAGTATAAATGTGAACAGTGCACGGCTAGTTACAAcaagaaagaaaatttaaccATACATATGGCTATGCACAACAAATCTCAACCTACTTGTCCTGTGTGCGACAGGAAATTTCAGAGGTTGGCTAGCTTGAAAGCTCACATTATAGTTCACGAAGTGGACGAAGCCTTCACCTGTCCGGAATGTTTGTCTGAATTTGAAAGAGAGGCAGACTTCAATAAACACATGGACGTTCATAAAAAAGATAAGCAGTCTGCTAAATCTGATAATTCACCTAAGGTGTGTTCGATTTGCAGTCAAGTTTTCAACGATACCAATCTTTATAAGGAACACATTACTTATCACGCCAAGattaaaaaaatgatgttAAACAGTAAGAAACAGAAAAGACGAATTAATACTAATAAGGAGTATCCTCATAAGTGCGAAGTTTGCGGTAAATCGTTTGTAAAGTTTTTCTTATTGGAACGGCACATGAGAATACACAGCGGAGAGAAACCGTTTGTGTGTCACATATGTAAACATGCTTTTGCCCAAAAAGGAACGTTACAGATTCATTTGGTCCATCACAGCGGAATAAAACCTTACAGTTGCACTTTGTGTGCAGCTAAATTTAGTCAGAAAGGTAATCTCCGTGTACACGTACAGAAAACTCATATAGTGCCGAGTCCTGGCTCTACAGTATACAAATGTACGATGTGCACTTGTGtatttaaaactgtttctTCATTAAATACGCATATTACGAGGGTGCATACCACCGAAAAGGAATGCGACGACATATCCGTTATATTGCAACAACTAAAGCAATTAGAGAGAAGCCTACCGAAGATTAGAAGCTTAGAAGAACCGGACAAAGCTGTACCGGTGTTGCCGGTAGACGAAGACCCAAATGAGGTCGACGAGAATGTAGAATTAGGGATGGATGTGAAATACGTTAAGGTGCAAAGGAAAGCGGGCGAATGTCAGTGGTACGTGTGCTCTTACTGTGGGAAGGAGTTCAAGAAACCTTCGGATTTGATTCGGCATATTCGAGTACATACTGGAGAAAAGCCGTTCAAGTGCAAACAGTGCGGGCAAACGTTTTCTTTAAAGTCCACCTTGAAAACGCACATGGAAACGCACGGGGCGAATAGACAGTATAAGTGTACGACTTGTTTAAAGTCGTTTACATCGTTAAAATCATTGAATTTCCATAACAGGCAACATGCCAAAAACTATACGAAGCGATTAGGTCTGCAAAATCACATGCCCAATCACATAAAAGCTGCGGTTACTAATACTAATATAAACGATTTTACTCGAGCTTTTGTATTGCAACAGCCCATGGTAGAGACGGAAGAAGGATTATTGCCTCTCGAACAGTTCAAATCGAGATCACAAGTTGCTACACCAAAAGCCAGGCCACATCAGTGTCCAATTTGTAAATCGGCTTTCATCAAATCGGTTCACCTCAAACGACACATGCTTACTCACACGGGCGAAAGGAAATTCCAATGCGATGTGTGTTCGAAatcGTTTTATTCCTCGTACTCTTTAAAAGAACATTTACAATTCCACAGTAACGAGAAGAATTTCTCGTGCAAAATATGCAACAAACGTTTCGTCACTAAGGGGATTCTAAGACGCCACTTATCTATACACAGCACCTTAAGGCCGTACGTTTGCCCCTATTGtaagaaacattttaaaacggttTTGCTGTGCCGCAAACACATTAGAActcataaaaaatttataaatatagagGACGCCGGTCAAATTGCAATGGTTGATGGCGAAGATGCCTCCGCTATAATTGATAATTCTTTGTCCGTTTGTTCGTTTTCTTTTCCCATATTAAACGGAGATGTTAATGTAAAATCCGACGGCGAGGAGGTGCTTAAGTTTACGTCGAAATCGAAAGAAATTAATCAGGATTACAGTTCGTCATCGAAAATATTGTTTACAAATTCGGAAAACGGAATTATTATATCTACTCCTTTGGATTTTCAGCTTAAGGAAGAGGTCAAAGAAACGCACGCTTCCCTGGGTCAATCTTTGTACGAAATTGGAAATCTTTCGTTGTTAACAGACACAACTGACAAAAACATATCGAATATTGGCGACTTGTCCGATttggaacaaaaaaatacgaattttcaCGCCGTTTTCATCAATTCCGAAGATATGCAGTCATTGTCGGACACCAATCTGTGTAGTACAGGATTTCCTCAATTGAAGAATATGGATCCGTTGATGATGAGCAACGTCAACCAGATTACTGATCCCAGCATAGTGTTCACTGCCGACACTtcatttaatcaattaaacgACTTACAGCTGGACACTCACAATTTAGAGACACTCCTTCCGACCTTCACTTTCGGCGATAAATTAACCTTAAATAACGTACCGTTAAATTCGAATTTCCCCAACATAATCTTGTCGAACGTCGACGATACCATCGACGTCGATCAGCTACCGATGTTTGGTAACGCAAAcgatgttaataaaaaagtgcAAGTTCAGCTCGTCCCCGAAGATCTACCAATTCAGTCTGACATCATGGATATAAATGACGATCCCTTAGCCGAAGCCGCCTCAAATCTGCTTTATAACACAAATCAGGAGACCGAAATAGCTGTAAATGCGACAGTCGACCGATCTAAGAGCGGCATGGATTCTGTAGTCTGTCTAAATTCGACAGTAGAATTTGCTTGTACATATTGTAAACAAGTTTTAAAGAGCACCAGCGACTTCAAAAACCACAAGTGCATTAGAAAGACGAACAAAAACGTAATCAAAAGGAAAGCGATTGCTTTCGAAGATAATTCGGAGAAAGAggAAAAGGCGTCCGAGGGCACATTAAACAATTCAAGCGCATTCCCATATAAATGTTCTCGTTGCAACGAATCCGTCGCTTCTAAAGCCGCTTTAACGCGGCACACGCTGACACACAAAGAGAAAAAGGTCGTCACAAACAACGTGTGTTCGTACTGCGCGAAAGCGTTCAAGAAATGTTCCGACTTGACGAGGCACATACGAACGCACACAGGAGAAAAACCGTATCATTGCGATAAATGCGACAAGAGCTTCTCTCTTAAGTCCACTTTGGAATCTCATTACAAGACGCACTTTCCGGCCAACAACAAATATTTCAATTGCGCCGTGTGCAATTCGAATTTCAGTTCGAAGTCCAGCTTGAAAGTTCACATTTTGATACACACCGGCATAAAACCGTATCAGTGTTCTATTTGTCCGGAAAAGTTTCGAACGTCCGGCCTGCGGAAGAATCACATGAagaatcattttaaaaaggcCAAGCAGATCGAGGAGGCGCATCTGTCGTTATTAGATGGCACGcaAAACGTTATGGAAATTCAGCAAGCTTCTCAATTATTGCTGCAAGAGTCTCAGAAGGACGATTTGTTTTCGAGCAACATAATCCAGGACGATCAGATACTGCTGCAACAGCTCCAATTAAATAACGTGCTGCTACAAAATAACATGGACAGCGAAGTGACATCTTTCATTCAAGTTAATATCGATGGCGATAACGTTAAGTCATCGAATGGCAATGTTAAAAAGGATAATTCGATAAGTCGGAAGTTTGAGTGCGACGTATGTTTGAAAAAGTACAGTACCAAATCGGTTTTGACGAAACATAAAAAGATTCACGCCATGAAGAACTTGTTTAACTGCATGAAATGCGACGATAAGTTTTCGTCGGAAGGAGATTTAGGCAATCACGTAAAGGTGCATTCGGGTTATCGGCCGTTTTGCTGTCAGTTGTGTGCCAACACTTTTAGCCAAGAGAAAAACCTGAAGACTCACATGAAAAGAACGACGGACGATGGAATAAAGAAATATAGCAACGGAAACCATGAATTGGTAAAAGTGTGGGGCGCCCGCAAACCAGAGACATATGGAGAAACATTGGGAAGGCCTATGTCCAGCATTGGATGGAACACGCACCCGGATATTTTGGAGACGCACGTGATCAGTCTGGCCCACGGAAGACTTGGAGAGGAAGTGTGCGCTTGCGTTAGGGTGACAAACGGCGCCCGAATTACGCTCGAAACGATCGCCCGATTTTGTTCGGGAAAAATGGCGACGTTCAAAATACCCACGCAGCTAAAGATCGTCGAGTCGTTTCCGAAAACGCAGTCCGGAAAAATACAGAAGTACGAGCTGAAAAAGCAGTTTGAAGTGTAA
Protein Sequence
MYAYIAIPIEMLQQYNDQGIQSLTLAQDVSLKTLPDGNINQQIQEHEVLKNVILMPIINSDNQLYNGSSEKLGQLVMETINEPNSNDMGKGAIRKSVILKSSSSNLNRKEVRYLKCKASQNKKVSVTKTKEGFKCTICGVVFDKMMLYRKHMEMHTNVKKYKCEQCTASYNKKENLTIHMAMHNKSQPTCPVCDRKFQRLASLKAHIIVHEVDEAFTCPECLSEFEREADFNKHMDVHKKDKQSAKSDNSPKVCSICSQVFNDTNLYKEHITYHAKIKKMMLNSKKQKRRINTNKEYPHKCEVCGKSFVKFFLLERHMRIHSGEKPFVCHICKHAFAQKGTLQIHLVHHSGIKPYSCTLCAAKFSQKGNLRVHVQKTHIVPSPGSTVYKCTMCTCVFKTVSSLNTHITRVHTTEKECDDISVILQQLKQLERSLPKIRSLEEPDKAVPVLPVDEDPNEVDENVELGMDVKYVKVQRKAGECQWYVCSYCGKEFKKPSDLIRHIRVHTGEKPFKCKQCGQTFSLKSTLKTHMETHGANRQYKCTTCLKSFTSLKSLNFHNRQHAKNYTKRLGLQNHMPNHIKAAVTNTNINDFTRAFVLQQPMVETEEGLLPLEQFKSRSQVATPKARPHQCPICKSAFIKSVHLKRHMLTHTGERKFQCDVCSKSFYSSYSLKEHLQFHSNEKNFSCKICNKRFVTKGILRRHLSIHSTLRPYVCPYCKKHFKTVLLCRKHIRTHKKFINIEDAGQIAMVDGEDASAIIDNSLSVCSFSFPILNGDVNVKSDGEEVLKFTSKSKEINQDYSSSSKILFTNSENGIIISTPLDFQLKEEVKETHASLGQSLYEIGNLSLLTDTTDKNISNIGDLSDLEQKNTNFHAVFINSEDMQSLSDTNLCSTGFPQLKNMDPLMMSNVNQITDPSIVFTADTSFNQLNDLQLDTHNLETLLPTFTFGDKLTLNNVPLNSNFPNIILSNVDDTIDVDQLPMFGNANDVNKKVQVQLVPEDLPIQSDIMDINDDPLAEAASNLLYNTNQETEIAVNATVDRSKSGMDSVVCLNSTVEFACTYCKQVLKSTSDFKNHKCIRKTNKNVIKRKAIAFEDNSEKEEKASEGTLNNSSAFPYKCSRCNESVASKAALTRHTLTHKEKKVVTNNVCSYCAKAFKKCSDLTRHIRTHTGEKPYHCDKCDKSFSLKSTLESHYKTHFPANNKYFNCAVCNSNFSSKSSLKVHILIHTGIKPYQCSICPEKFRTSGLRKNHMKNHFKKAKQIEEAHLSLLDGTQNVMEIQQASQLLLQESQKDDLFSSNIIQDDQILLQQLQLNNVLLQNNMDSEVTSFIQVNIDGDNVKSSNGNVKKDNSISRKFECDVCLKKYSTKSVLTKHKKIHAMKNLFNCMKCDDKFSSEGDLGNHVKVHSGYRPFCCQLCANTFSQEKNLKTHMKRTTDDGIKKYSNGNHELVKVWGARKPETYGETLGRPMSSIGWNTHPDILETHVISLAHGRLGEEVCACVRVTNGARITLETIARFCSGKMATFKIPTQLKIVESFPKTQSGKIQKYELKKQFEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-