Rgig009356.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000019.1:4753011-4760201[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.0001 0.0098 17.1 4.7 1 23 131 153 131 153 0.99
2 29 0.00035 0.033 15.5 1.6 1 23 159 181 159 181 0.93
3 29 0.017 1.6 10.1 10.6 1 23 186 208 186 208 0.99
4 29 1.2e-05 0.0011 20.1 0.9 2 23 215 236 214 237 0.94
5 29 0.041 3.8 9.0 1.1 2 23 243 264 242 264 0.96
6 29 0.00023 0.021 16.0 0.7 1 23 274 296 274 296 0.97
7 29 1.1e-05 0.001 20.2 0.4 1 23 302 324 302 324 0.98
8 29 0.0039 0.37 12.2 4.4 1 23 330 352 330 352 0.98
9 29 9.9e-08 9.3e-06 26.6 4.2 1 23 358 380 358 380 0.99
10 29 0.00079 0.074 14.3 6.3 5 23 389 407 386 407 0.96
11 29 0.00055 0.052 14.8 2.6 2 23 439 460 436 460 0.89
12 29 1.1e-05 0.0011 20.1 0.7 1 23 466 488 466 488 0.96
13 29 0.0004 0.037 15.3 1.9 1 23 494 516 494 516 0.98
14 29 0.0014 0.13 13.6 2.4 2 23 523 545 520 545 0.92
15 29 2.1e-06 0.0002 22.4 0.3 1 23 550 572 550 572 0.98
16 29 1.2e-05 0.0011 20.0 2.5 1 23 582 604 582 604 0.98
17 29 1.4e-05 0.0013 19.8 0.1 1 23 611 633 611 633 0.98
18 29 0.0002 0.018 16.2 2.6 2 21 640 659 639 661 0.94
19 29 7e-06 0.00066 20.8 1.1 1 23 667 689 667 689 0.99
20 29 0.49 45 5.6 3.7 2 23 731 752 730 752 0.97
21 29 0.0087 0.81 11.1 0.7 2 23 765 786 764 786 0.96
22 29 0.023 2.1 9.8 0.6 3 23 811 832 810 832 0.97
23 29 2.8 2.6e+02 3.2 4.1 1 23 836 858 836 858 0.95
24 29 0.00035 0.033 15.4 2.1 1 23 868 891 868 891 0.97
25 29 0.00027 0.026 15.8 0.1 1 23 899 921 899 921 0.98
26 29 0.0023 0.22 12.9 5.8 2 23 927 948 927 948 0.98
27 29 0.0015 0.14 13.4 1.2 2 23 958 979 957 979 0.95
28 29 0.21 19 6.7 0.1 2 23 991 1012 990 1012 0.96
29 29 0.0002 0.019 16.2 1.0 1 19 1018 1036 1018 1038 0.95

Sequence Information

Coding Sequence
ATGGCGATCTATTTATTGAACACAAATACCTTTTCCGTAGTGCCTAAAGAACGCGATCCGCACGTTTTAAATCGTCTTTCCCAAACATGCTGTTTATACGATCAAAGCAGCCTGTACACGTCGCACTTTGACGCGCACTTGTTGGCACTGAACGAATCGAAATCGACGTCCAGTTTGTCGGACGTGAATCTTCTCGATCCCGTCGAAGATCAGCTGAACGACACGGACCGCGAGCTATTGAACCTGTTGGCGGTGGAGGACGATTGCACggacattttacaaaatatcgcGAGCAACGAGAACTTTCAGAACTTGATCGACGAGGGCGCGGCAGCGTTCGAAGATTTCTCGTTGCCCGTCGAAATCGAGAAGCCGAAGAAGTTGGGAAAGTACAAGTGCGATCGGTGCGACAAGACGTGCACGACCAAGAAATTGCTCCGTTATCATTTGATGATACATTTCGACGTGCGCGAGCACGCTTGCGACGTTTGCGGCAAAACGTTCCGGCACAAGTACGAGGTCGCGGAACACAAGCTGGCTCACGGCAAGCCGAGATATCAGTGCGATTTCTGttcgaaaatgtttatacATAAGTCGCACTTGACGTGCCATAGGCGCAAGCATACGGGCGATTATGTTGTTTATTGTAAGATGTGCGGGAAGGGGTTTGTTACGCAGTCGGCATACAGGAATCACGTTAACATACACCACAATGGAGTCTTGTGTATGTGCGACGTGTGCGGCAGCAGATTAAGTTCGGATACTTCTCTCAAGGAGCATCTGCTCACTCACGAAAAGGGTTACGGGGTGGAACGTCCGCACGTTTGCGACGTGTGCGGTAAAGATTATTTGAGCGCGCGGAATTTGCGCACGCACATGAAAATACACGACCGCGCGAACGATTACAGTTGTAACATATGCGGGAAAACGTTGAGCGGGAAAAAGGCGCTCGAGACGCACCTGAAGATGCACGTGGGCGATAAGAATTTCGTTTGCGAGTTTTGCAGCAAGCGGTTCACGTGTAAGGATTACTTGGTCGTGCACAGGCGCACGCACACCGGCGATAGGCCGTTCAAGTGTAACATTTGCGACAAGTGCTTCACGCAGAAGACCTCTTTGACCGTTCACATTCGAAGCCACACGGGCGAACGACCTTATAGGTGTCATTGCGGCAAGAGCTTCATCACGAAGTCGCATTTGACCACGCACAGTAAAACCCATAATATTGGTAACATTGATTTTATGAATATTGTGGTTACAATAGACGAAGATGACGCAGCCGCTAAGTTAGATTTTGACATTAAATATGTATGCGAATGTTGGGTGTGCTCAAAGAAATTTGTGCATATCCAGTATCTCAAAAAGCACATGGCAATACACAGCTACGAAAAACCGTATTTGTGCGAGATCTGTCCGAAGACGTTTAAGCGATTGCCCGAGCTCAGGTTGCACAAGAAGACGCACGATAAAGAGAAATTATACCAGTGCGACATTTGCCACAGGGCGCTCAAGAGTTCAAACCAGCTTATATTGCATAAGAACCGTCATCTTAAGAAATACGTTTGCTTTTGCTCCATCTGCGATGAAGGATTTTACACGCGCCAGGAAATGAAACGGCACATCTCGAAGAAGCACGAGAACGTCGTCTACACCTGCGCCATTTGTGGTAAACCTCTCAAGGACGAAAGTTACTTGAAGCGTCACATGGAAAGACATAAGAGCGATTACACCACCAGCAAACAgtataaatgtaatatatgCAATAAGGCGTACAATTTCAAAACCACCCTGACTCGACATCTCAAAGAACATAGCGGGCAAAAGCCGCGGTACGTGTGCGACATGTGCGGCAAATCGTTGTCGAGCAACAAAAGCTTAGAGGAGCACCTGCTGGTTCACAAAGGCTTGAAGCCGCTGAAGTGCGAAGTGTGCGATAAGTCTTTCGCGAAGACGAACAGCTTGAAAGTTCACATGCGATGCCATACCGGCGAGAAACCGTATCGCTGCGAGAGGTGCGGGAAGTGTTTCGCGCAACGTCCGCCACTGATAATTCACATGCGATACCACACCGGCGAGAGGCCGTTCACGTGCGACATTTGCGATAATACGTCAATCCAAATCGAGGACGATTCGAGCGAGGACGAGGCCAAAGATGCCGAATCTTCGAAGGATGCTCGTAAAGTATTGTGCAAGTGCAAGATTTGCATCAAAACGTTGAATTTTCCGAAGACGTTCGACGAACACATGAAAACGCACGGTGAGATCCAAACGTCGGTCGCCGAGGAATCGTGCGAGTGCAAACTTTGCGGGGCAATCATCAAATTTCCCGACAGCTTCAGCAAGCACATGCAGGTGCACACGAATAATTCCGAACACTTCGGTTTCAATTCGCCGAACAATAAGGTTCGTCTGGGCGGTTACTCGGTGCTGTGTCGTTTGTGCGACGCCGTTTCTTACACGAGGTCCGAGTTTTTGAAGCACATCAACACCAAGCACAGAAAGACTTATACGTGCGACGTATGTAACCAGCATTGCGGGAATTATATTAGTTTCACGTTGCATAATCAGTTGCACGATTTGAAACGAAGCGTGAAGACGATTTATAAGTGCAACAGGTGCGAGGAGGAGTTCTCGCATTTGGCGAGCTTACGTCAGCACGCCAGGAATCGTCACGCTGACGTGATAAAAGGCGATTTCACTTGCGACGTATGCGAAAAGGTCTTATCGTCGGCAATCAATCTTGTCAATCACAAACGGTTGCACCAGCTGCATCCAAACAGGTGCACTCATTGTCGGAAGCGTCTCTCGAAGCCGGGTTTCTTGAAGCGACACATGAAGAAACATTTGATCGGTTCGTGCGACAACAAGTCGGTTTGTAAGAGGTGCAATAAAAAGTTCGATAACCCGGAAGATTTTGTTGCGCATAAAAAGTTCCATAGATTGTCTATTGCCGAAGACAATCGAAACATGGTTTGCGCAATTTGTCTGGAAGTGTTTGCTTGGAAAACGCAATTCGAGAAGCATCTCCTTTCGCACGATAATTACAGGCCGTTCGAGTGCAAGAATTGTCCGATGTCGTTCAAAACGTCATTGCACCTTCAAAGGCACGAACTGTAA
Protein Sequence
MAIYLLNTNTFSVVPKERDPHVLNRLSQTCCLYDQSSLYTSHFDAHLLALNESKSTSSLSDVNLLDPVEDQLNDTDRELLNLLAVEDDCTDILQNIASNENFQNLIDEGAAAFEDFSLPVEIEKPKKLGKYKCDRCDKTCTTKKLLRYHLMIHFDVREHACDVCGKTFRHKYEVAEHKLAHGKPRYQCDFCSKMFIHKSHLTCHRRKHTGDYVVYCKMCGKGFVTQSAYRNHVNIHHNGVLCMCDVCGSRLSSDTSLKEHLLTHEKGYGVERPHVCDVCGKDYLSARNLRTHMKIHDRANDYSCNICGKTLSGKKALETHLKMHVGDKNFVCEFCSKRFTCKDYLVVHRRTHTGDRPFKCNICDKCFTQKTSLTVHIRSHTGERPYRCHCGKSFITKSHLTTHSKTHNIGNIDFMNIVVTIDEDDAAAKLDFDIKYVCECWVCSKKFVHIQYLKKHMAIHSYEKPYLCEICPKTFKRLPELRLHKKTHDKEKLYQCDICHRALKSSNQLILHKNRHLKKYVCFCSICDEGFYTRQEMKRHISKKHENVVYTCAICGKPLKDESYLKRHMERHKSDYTTSKQYKCNICNKAYNFKTTLTRHLKEHSGQKPRYVCDMCGKSLSSNKSLEEHLLVHKGLKPLKCEVCDKSFAKTNSLKVHMRCHTGEKPYRCERCGKCFAQRPPLIIHMRYHTGERPFTCDICDNTSIQIEDDSSEDEAKDAESSKDARKVLCKCKICIKTLNFPKTFDEHMKTHGEIQTSVAEESCECKLCGAIIKFPDSFSKHMQVHTNNSEHFGFNSPNNKVRLGGYSVLCRLCDAVSYTRSEFLKHINTKHRKTYTCDVCNQHCGNYISFTLHNQLHDLKRSVKTIYKCNRCEEEFSHLASLRQHARNRHADVIKGDFTCDVCEKVLSSAINLVNHKRLHQLHPNRCTHCRKRLSKPGFLKRHMKKHLIGSCDNKSVCKRCNKKFDNPEDFVAHKKFHRLSIAEDNRNMVCAICLEVFAWKTQFEKHLLSHDNYRPFECKNCPMSFKTSLHLQRHEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-