Rgig008290.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Rhagophthalmus giganteus
Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000008.1:7137177-7139895[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00053 0.05 14.9 4.1 2 23 244 265 244 265 0.98
2 22 0.00028 0.026 15.8 2.1 1 23 271 293 271 293 0.99
3 22 0.0016 0.15 13.4 5.3 1 23 299 321 299 321 0.98
4 22 3.2e-05 0.003 18.7 1.9 1 23 327 349 327 349 0.99
5 22 4.4e-05 0.0041 18.3 3.0 1 23 355 378 355 378 0.98
6 22 6.5e-06 0.00061 20.9 1.5 1 23 384 406 384 406 0.99
7 22 1.9e-05 0.0018 19.4 1.8 1 23 412 434 412 434 0.99
8 22 1.1 1.1e+02 4.4 0.5 1 17 440 456 440 457 0.94
9 22 1.4e-06 0.00013 23.0 2.0 1 23 468 490 468 490 0.99
10 22 1.5e-06 0.00014 22.9 1.6 1 23 496 518 496 518 0.99
11 22 5.3e-07 5e-05 24.3 2.9 1 23 524 546 524 546 0.99
12 22 7.3e-05 0.0068 17.6 3.3 1 23 552 574 552 574 0.99
13 22 3.9e-05 0.0036 18.5 0.6 1 23 580 602 580 602 0.98
14 22 0.00043 0.04 15.2 0.7 1 23 608 630 608 630 0.99
15 22 1.6e-07 1.5e-05 26.0 0.6 1 23 636 658 636 658 0.98
16 22 2.4e-05 0.0023 19.1 2.3 1 23 664 686 664 686 0.99
17 22 2.3e-07 2.1e-05 25.5 1.1 1 23 692 714 692 714 0.99
18 22 0.00077 0.072 14.4 6.2 1 23 720 743 720 743 0.98
19 22 2e-07 1.9e-05 25.6 2.9 1 23 749 771 749 771 0.98
20 22 2.3e-06 0.00022 22.3 1.5 1 23 777 799 777 799 0.99
21 22 1.5e-07 1.4e-05 26.0 0.8 1 23 805 827 805 827 0.98
22 22 3.7e-06 0.00034 21.7 2.6 1 23 833 855 833 855 0.99

Sequence Information

Coding Sequence
ATGAAGTTTCTTTGTAGAACCTGCTTACGAGAGGAATTTGTTAACACATCGGACAGTTTCGATTTCGACGATCATTATAAACACCAACTGATGTATTGCGTGCCGGAAATGgACTTACGAGTATTACCCGATGTGAAATTGTGCAGGGATTGTGTCTCTGCCCTTAATGTGAtctacgaatttaaaattaaatgtcgagACGTGGAAGACAAGTTTAATAAGGGCCAATATAATGTAATAGGACGTTTAATGATTAAACAAGAAATGGCAATGGATGGTTCTGATGGCAATATCCATACTGATTGTAGAACGTGTCTTATGAACATTACAGATAGTACTTCTCTTTTTGTAATGAAAGGATCGATATATATGCATATTTTGATGATTTGTGTTCCAGAAATGAATTTGCAGATTGTATCTGATGTTAACCTATGTAATGATTGTTATACGCTACTCGATTTGGCCTACAAATTTAAACTGAAATGTTTAGACgtggaaaaaaatattaaggaaTACTTGAAGTCTCACAAGACTTTAGATTGTAGCGACTTGTCTATGTGGTGCAATATATTCATCAAAAACGAAATAAGCAACATGTCAGAATCTACGATTAAACAAGAAGAAATCGATTTAATAAACGAGGacgaattattaattaagaaacGTGGAATTACGAAATATGGTCTCTTTGGCGGACGTATTTCCTCATCTATTCCGAAGAAACTACGTAAATGTGTGCATTGTGATTATAGGACTGCACAAAAATCTCATTTCGAAGCGCACGTGCGTACACATACTGGCGAAAAACCTTACAAGTGTTTACACTGCGAGTATAGTGCCGCACAAAAGTCTCGTTTACGAGAACATATTCGTACGCATACTGGCGAAAAACCGTACAAGTGTTTCCATTGTTCGTACAGTGCTACACAGAAATCGCAATTACGAGCCCACGTTCATATGCATACTGGCAGAAAACCTTATAAGTGTTCGCAATGTGATTACACTGCTGcacaaaaatttcatttagaaGCACATATTCGTAGGCATACTGGCGAGAAACCGTTTAAGTGCGTACATTGCGAGTACAGCGGCACGACGAGGTCTAACTTGAAAAAACATATTCAAATGCAACATGTTAGCgagaaaccatttaaatgtttatactGCAAGTACAGCACTGCGCAAAATTCCCAATTACAAAACCACATTCGCATACATACTGGCGAAAAGCCATTTAAGTGTTTACATTGCGAGTATAGTGCGGCACAAAACTCGCAATTAAAAAGACACATACGTGTACATATCGACGAAAACTCATTTAATTGTTTACGTTGCGAACACGATTTTGCATACAAATCGAATTTACAAGGACGAATTTGCACGCACACCGAAAAGAAACTGTTTAAATGTTCATATTGCGATTACAGTACTGTGGAAAACTCTCAATTGAAAAAACACATTCGCACGCACACCggcgaaaaaccatttaagtgtccGTATTGCAAGTACAGGGCCGTACAAAACTCCCAATTGCAAAAACATATTCGTACGCACACCGGCGAAAAACCGTACCAATGTTTACAGTGCAAATATAGTTTTTCGGACAAGTCTAATTTACGAAACCATGTTCGCAGACACACCGGCGAGAAACCATTTCGGTGTTCGCACTGCGAATACAGAAGCGTAAATAGATCCGGTTTAAAGGTACATATGCGCAAACACACCCGCGAGAAACTGTATAAGTGTTCACTTTGCGAGTATAGCGCTACGACAAGagctaatttaaaaagacaCGTGCGCGCACATACCGGCGAAAAACCATTCAAATGTTTACAATGCGAATATACTGCTGTGGAAAACTCCCAATTACAAAAGCATGTACGTACGCACACTGGCGAAAAACCGTTCGTGTGTTTATATTGCGAATACAGTTTCGCAGACAAATCGAATTTACAAGATCACATTCGCACGCACACTGGCGAAAAGccgtttaaatgtttacattgCGAGTATAGTGCTAAACAAAAAGCTCAATTAATAAGGCACATACGCACGCATACCGGCGAAAAACCGTTCAAATGTTTATATTGCGAATACAGGTTTGCGGACCAATCGAATTTACAAGATCATATTCGCACACACACCggcgaaaaaccatttaaatgtttgcaTTGCGAATATAGCGCTAAGCAAAagtcgcaattaaaaaaacacattcACACGCAACATTTAGACGAGAAGCCGTTCTATTGTTTCTATTGTAAATACAGCTTTGCGGACAAAtcgaatttacaaaatcacattcgcacacatacCGGCGAAAAACCGTTTCAGTGTTTACATTGCGGCTATAGTGGCAAACAAAAGGCTCAATTAATAAGACATATGCGCATACATACTGGCGAAAAACCATTCGAGTGTTTATATTGTGAATACAGATTTGCGGACCAATCGAATTTACAAGACCACATGCGCACACACACCGGCGAAAAGCCGTTTAAGTGTTTGCATTGCGATTACAGTGCCGCACAAAACTCGCAATTGAAAAGACATATTCGTACACACGCCGACGAGAAACCGGATAAGTGTGAGAAGCTTTAG
Protein Sequence
MKFLCRTCLREEFVNTSDSFDFDDHYKHQLMYCVPEMDLRVLPDVKLCRDCVSALNVIYEFKIKCRDVEDKFNKGQYNVIGRLMIKQEMAMDGSDGNIHTDCRTCLMNITDSTSLFVMKGSIYMHILMICVPEMNLQIVSDVNLCNDCYTLLDLAYKFKLKCLDVEKNIKEYLKSHKTLDCSDLSMWCNIFIKNEISNMSESTIKQEEIDLINEDELLIKKRGITKYGLFGGRISSSIPKKLRKCVHCDYRTAQKSHFEAHVRTHTGEKPYKCLHCEYSAAQKSRLREHIRTHTGEKPYKCFHCSYSATQKSQLRAHVHMHTGRKPYKCSQCDYTAAQKFHLEAHIRRHTGEKPFKCVHCEYSGTTRSNLKKHIQMQHVSEKPFKCLYCKYSTAQNSQLQNHIRIHTGEKPFKCLHCEYSAAQNSQLKRHIRVHIDENSFNCLRCEHDFAYKSNLQGRICTHTEKKLFKCSYCDYSTVENSQLKKHIRTHTGEKPFKCPYCKYRAVQNSQLQKHIRTHTGEKPYQCLQCKYSFSDKSNLRNHVRRHTGEKPFRCSHCEYRSVNRSGLKVHMRKHTREKLYKCSLCEYSATTRANLKRHVRAHTGEKPFKCLQCEYTAVENSQLQKHVRTHTGEKPFVCLYCEYSFADKSNLQDHIRTHTGEKPFKCLHCEYSAKQKAQLIRHIRTHTGEKPFKCLYCEYRFADQSNLQDHIRTHTGEKPFKCLHCEYSAKQKSQLKKHIHTQHLDEKPFYCFYCKYSFADKSNLQNHIRTHTGEKPFQCLHCGYSGKQKAQLIRHMRIHTGEKPFECLYCEYRFADQSNLQDHMRTHTGEKPFKCLHCDYSAAQNSQLKRHIRTHADEKPDKCEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-